RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 RAB10P61026 200 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 LAMB3Q13751 1172 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CYTH1Q15438 398 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ERN2Q76MJ5 926 aaKnown RBP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 PARS2Q7L3T8 475 aaKnown RBP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CEP97Q8IW35 865 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 OR2AP1Q8NGE2 309 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 HDAC10Q969S8 669 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ISG20Q96AZ6 181 aaKnown RBP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ELMO2Q96JJ3 720 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SCUBE2Q9NQ36 999 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 DYRK4Q9NR20 520 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 FBXO6Q9NRD1 293 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 AASDHPPTQ9NRN7 309 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 HEY2Q9UBP5 337 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ZFP69BQ9UJL9 534 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SCN8AQ9UQD0 1980 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 G3V2L1 256 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CCL22O00626 93 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SLC31A1O15431 190 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ITM2AO43736 263 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 LYPLA1O75608 230 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 UNC5CO95185 931 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 KITP10721 976 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 RALBP11234 206 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CD59P13987 128 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 STMN1P16949 149 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 GRK2P25098 689 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SKIV2L2P42285 1042 aaKnown RBP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CCR5P51681 352 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ARSDP51689 593 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 PRAMEP78395 509 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ZNF460Q14592 562 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 MYLK3Q32MK0 819 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ZNF789Q5FWF6 425 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 FBXW10Q5XX13 1052 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 SEL1L3Q68CR1 1132 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CNSTQ6PJW8 725 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 PTAR1Q7Z6K3 402 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 LCA5Q86VQ0 697 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CILP2Q8IUL8 1156 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 GPATCH11Q8N954 259 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 OR6P1Q8NGX9 317 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 PEX13Q92968 403 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 NSMCE3Q96MG7 304 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 TSNARE1Q96NA8 513 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 CAAP1Q9H8G2 361 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 FZD3Q9NPG1 666 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 TXLNGQ9NUQ3 528 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 KCNK4Q9NYG8 393 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 MARCOQ9UEW3 520 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ITM2BQ9Y287 266 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ACOT9Q9Y305 439 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 ARL5AQ9Y689 179 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 PCNX2A6NKB5 2137 aa11.84□□□□□ -0.51
CLIP1-208ENST00000537004 DMXL2Q8TDJ6 3036 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 A0A1W2PQU0 124 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 SH3BP5O60239 455 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 RNGTTO60942 597 aaKnown RBP11.83□□□□□ -0.52
CLIP1-208ENST00000537004 PCDH8O95206 1070 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 APOA4P06727 396 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 PIRTP0C851 137 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 COL6A2P12110 1019 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 CES1P23141 567 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 SERPINB3P29508 390 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 GRIA4P48058 902 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 LEPRP48357 1165 aaKnown RBP11.83□□□□□ -0.52
CLIP1-208ENST00000537004 RHOAP61586 193 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 RACK1P63244 317 aaKnown RBP11.83□□□□□ -0.52
CLIP1-208ENST00000537004 POU4F1Q01851 419 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 ACVR1Q04771 509 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 ITGA9Q13797 1035 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 SPDYAQ5MJ70 313 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 CLNKQ7Z7G1 428 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 GALNT7Q86SF2 657 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 CENPLQ8N0S6 344 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-208ENST00000537004 BRSK1Q8TDC3 778 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 KCTD4Q8WVF5 259 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 SKA1Q96BD8 255 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 HDAC8Q9BY41 377 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 SLC40A1Q9NP59 571 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 DNAAF2Q9NVR5 837 aaKnown RBP11.83□□□□□ -0.52
CLIP1-208ENST00000537004 CPSF2Q9P2I0 782 aaKnown RBP11.83□□□□□ -0.52
CLIP1-208ENST00000537004 LHX3Q9UBR4 397 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 ZFR2Q9UPR6 939 aaKnown RBP11.83□□□□□ -0.52
CLIP1-208ENST00000537004 DOCK9Q9BZ29 2069 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 ZNF106Q9H2Y7 1883 aaKnown RBP11.83□□□□□ -0.52
CLIP1-208ENST00000537004 EPG5Q9HCE0 2579 aa11.83□□□□□ -0.52
CLIP1-208ENST00000537004 CFAP73A6NFT4 308 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 OR51F1A6NGY5 319 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 C16orf96A6NNT2 1141 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 H0Y8X5 98 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 ADRB3P13945 408 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 ITGB7P26010 798 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 CRABP2P29373 138 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 TAS2R39P59534 338 aa11.82□□□□□ -0.52
CLIP1-208ENST00000537004 SNRPD1P62314 119 aaKnown RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 INO80DQ53TQ3 878 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-208ENST00000537004 RBM20Q5T481 1227 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms