RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TREX1Q9NSU2 369 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 ZDHHC3Q9NYG2 299 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 TCAF1Q9Y4C2 921 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 SLC30A1Q9Y6M5 507 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 ARHGEF17Q96PE2 2063 aaPredicted RBP12.77□□□□□ -0.37
VPS28-216ENST00000533806 RP1P56715 2156 aa12.77□□□□□ -0.37
VPS28-216ENST00000533806 LAMA5O15230 3695 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 MAP1BP46821 2468 aaKnown RBP12.76□□□□□ -0.37
VPS28-216ENST00000533806 KIR2DS5A0A0G2JLQ3 304 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 A0A0G2JNG1 304 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 GOLGA6L10A0A0M3HER8 536 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 CCDC162PA2VCL2 907 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 OR51F1A6NGY5 319 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 OR2AG2A6NM03 316 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 OR5K4A6NMS3 321 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 KIR2DS3K7RE56 304 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 TMEM63AO94886 807 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 GAS8O95995 478 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 RPLP0P05388 317 aaKnown RBP12.76□□□□□ -0.37
VPS28-216ENST00000533806 XRCC1P18887 633 aaPredicted RBP12.76□□□□□ -0.37
VPS28-216ENST00000533806 MSH3P20585 1137 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 ACRV1P26436 265 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 IVDP26440 423 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 CD1CP29017 333 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 FOXN2P32314 431 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 MAGEA3P43357 314 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 CACNG1Q06432 222 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 KIR2DS5Q14953 304 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 INSCQ1MX18 579 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 PLA2G4EQ3MJ16 856 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 ARMC3Q5W041 872 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 METRNLQ641Q3 311 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 RBM44Q6ZP01 1051 aaKnown RBP12.76□□□□□ -0.37
VPS28-216ENST00000533806 FAM83HQ6ZRV2 1179 aaPredicted RBP12.76□□□□□ -0.37
VPS28-216ENST00000533806 AMZ2Q86W34 360 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 SERPINA9Q86WD7 417 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 TRAPPC5Q8IUR0 188 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 MCUQ8NE86 351 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 NAT14Q8WUY8 206 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 HEXDCQ8WVB3 486 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 HDAC10Q969S8 669 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 GRAMD1AQ96CP6 724 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 DEPDC7Q96QD5 511 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 COPS8Q99627 209 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 KIFC1Q9BW19 673 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 IL22Q9GZX6 179 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 DDX47Q9H0S4 455 aaKnown RBP12.76□□□□□ -0.37
VPS28-216ENST00000533806 ZNF624Q9P2J8 865 aaPredicted RBP12.76□□□□□ -0.37
VPS28-216ENST00000533806 CRLS1Q9UJA2 301 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 PCDHB1Q9Y5F3 818 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 ENTPD2Q9Y5L3 495 aa12.76□□□□□ -0.37
VPS28-216ENST00000533806 KMT2BQ9UMN6 2715 aaPredicted RBP12.76□□□□□ -0.37
VPS28-216ENST00000533806 ANKRD11Q6UB99 2663 aaPredicted RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 CELSR3Q9NYQ7 3312 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 TRBV23OR9-2A0A075B6M9 112 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 CCDC78A2IDD5 438 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 KLHL33A6NCF5 533 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 TMEM8BA6NDV4 472 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 MGAT4DA6NG13 374 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 RHPN2P1A8MT19 583 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 D6RAR5 112 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 SNX2O60749 519 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 AVILO75366 819 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 CSO75390 466 aaKnown RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 MLNP12872 115 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 ATP1B2P14415 290 aaPredicted RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 IDSP22304 550 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 ARNTP27540 789 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 SLC19A1P41440 591 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 PRLHRP49683 370 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 VPS41P49754 854 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 SESN2P58004 480 aaPredicted RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 OR1D5P58170 312 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 ETF1P62495 437 aaKnown RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 CRADDP78560 199 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 CFHR1Q03591 330 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 ZFP36L1Q07352 338 aaKnown RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 GTF2H3Q13889 308 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 SPIDRQ14159 915 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 DBN1Q16643 649 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 CLPPQ16740 277 aaPredicted RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 ZRANB3Q5FWF4 1079 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 FNBP1LQ5T0N5 605 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 ZNF574Q6ZN55 896 aaPredicted RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 B3GNT8Q7Z7M8 397 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 BEND7Q8N7W2 519 aaPredicted RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 NAT8LQ8N9F0 302 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 Q8N9G6 341 aaPredicted RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 OR2L2Q8NH16 312 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 GRK7Q8WTQ7 553 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 GFM1Q96RP9 751 aaKnown RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 MRM3Q9HC36 420 aaKnown RBP12.75□□□□□ -0.37
VPS28-216ENST00000533806 RNF14Q9UBS8 474 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 DNAJC16Q9Y2G8 782 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 WDR37Q9Y2I8 494 aa12.75□□□□□ -0.37
VPS28-216ENST00000533806 DSPP15924 2871 aaKnown RBP12.74□□□□□ -0.37
VPS28-216ENST00000533806 IGHV1OR21-1A0A087WYE8 117 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 C17orf113A0A1B0GUU1 675 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 TAF4O00268 1085 aa12.74□□□□□ -0.37
VPS28-216ENST00000533806 GOT2P00505 430 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms