RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 C16orf46Q6P387 395 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 BNIPLQ7Z465 357 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 CHST14Q8NCH0 376 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 GSDMBQ8TAX9 411 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 LMX1AQ8TE12 382 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 NSMCE1Q8WV22 266 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ASB12Q8WXK4 309 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 NT5C3BQ969T7 300 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 PTCD3Q96EY7 689 aaKnown RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 FEM1CQ96JP0 617 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 NPY6RQ99463 290 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 IL12RB2Q99665 862 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 C2orf49Q9BVC5 232 aaPredicted RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 NMUR2Q9GZQ4 415 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 MUC3BQ9H195 1237 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 DDIT4Q9NX09 232 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 MARCOQ9UEW3 520 aaPredicted RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ZNF180Q9UJW8 692 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ACSL6Q9UKU0 697 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 VANGL2Q9ULK5 521 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 SNX10Q9Y5X0 201 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 MAST4O15021 2626 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 RP1P56715 2156 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 M0QYT0 321 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 KCNK1O00180 336 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 RNF103O00237 685 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 FPGTO14772 594 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 RAD51BO15315 384 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 EFSO43281 561 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 DIAPH2O60879 1101 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 MT-CO1P00395 513 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ALDOAP04075 364 aaKnown RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 PRKCGP05129 697 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 RHOCP08134 193 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 TROVE2P10155 538 aaKnown RBP eCLIP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 TPSB2P20231 275 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ITGB7P26010 798 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 MGAT1P26572 445 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ALDH3A1P30838 453 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 RECQLP46063 649 aaPredicted RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 INHBCP55103 352 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 AP1B1Q10567 949 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 EIF2B5Q13144 721 aaKnown RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 EIF3IQ13347 325 aaKnown RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 TPSAB1Q15661 275 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 PARP6Q2NL67 630 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ARSIQ5FYB1 569 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 C22orf39Q6P5X5 142 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 USP53Q70EK8 1073 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ARCQ7LC44 396 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 STRADAQ7RTN6 431 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 NDUFAF2Q8N183 169 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 NPWQ8N729 165 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 DCAF4L2Q8NA75 395 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 DENND6BQ8NEG7 585 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 TFB1MQ8WVM0 346 aaKnown RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 SGF29Q96ES7 293 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 SPATA13Q96N96 652 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 ZNF570Q96NI8 536 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 SEMA3CQ99985 751 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 TACO1Q9BSH4 297 aaKnown RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 CADM1Q9BY67 442 aaKnown RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 TRIM55Q9BYV6 548 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 TRIM4Q9C037 500 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 DENND2DQ9H6A0 471 aaPredicted RBP8.19□□□□□ -1.1
NEDD8-207ENST00000533242 VPS51Q9UID3 782 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 KLF15Q9UIH9 416 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 EMCNQ9ULC0 261 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 FADS3Q9Y5Q0 445 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 HS3ST4Q9Y661 456 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 CELSR3Q9NYQ7 3312 aa8.19□□□□□ -1.1
NEDD8-207ENST00000533242 LRP4O75096 1905 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 K7ERQ8 282 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 NTN3O00634 580 aaPredicted RBP8.18□□□□□ -1.1
NEDD8-207ENST00000533242 TRAFD1O14545 582 aaPredicted RBP8.18□□□□□ -1.1
NEDD8-207ENST00000533242 MUSKO15146 869 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 SNAP91O60641 907 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 NTRK1P04629 796 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 KITP10721 976 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 ADRB3P13945 408 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 ARRB2P32121 409 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 CPA2P48052 419 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 NR2C2P49116 596 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 PDX1P52945 283 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 ARFIP2P53365 341 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 OCRLQ01968 901 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 PDE1CQ14123 709 aaPredicted RBP8.18□□□□□ -1.1
NEDD8-207ENST00000533242 SPIDRQ14159 915 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 CHI3L2Q15782 390 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 C6orf132Q5T0Z8 1188 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 CRTC1Q6UUV9 634 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 ZNF574Q6ZN55 896 aaPredicted RBP8.18□□□□□ -1.1
NEDD8-207ENST00000533242 C14orf80Q86SX3 495 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 TREML1Q86YW5 311 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 LURAP1LQ8IV03 231 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 SLC35F3Q8IY50 421 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 ZNF567Q8N184 647 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 GRIN3AQ8TCU5 1115 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 ZNF398Q8TD17 642 aa8.18□□□□□ -1.1
NEDD8-207ENST00000533242 INPP5DQ92835 1189 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms