RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 TMEM220Q6QAJ8 160 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 WDR74Q6RFH5 385 aaPredicted RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 ABRAXAS1Q6UWZ7 409 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 AMZ2Q86W34 360 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 RASGEF1AQ8N9B8 481 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 CCDC112Q8NEF3 446 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 DDHD1Q8NEL9 900 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 UBL7Q96S82 380 aaPredicted RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 B3GNT4Q9C0J1 378 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 EPB41L1Q9H4G0 881 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 ASB8Q9H765 288 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 TMEM9Q9P0T7 183 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 SCHIP1Q9P0W5 487 aaPredicted RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 ACSL6Q9UKU0 697 aa16.96■□□□□ 0.31
PHRF1-204ENST00000532550 DNMT3AQ9Y6K1 912 aaPredicted RBP16.96■□□□□ 0.31
PHRF1-204ENST00000532550 BPTFQ12830 3046 aa16.96■□□□□ 0.3
PHRF1-204ENST00000532550 A8MU76 341 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 PSMD3O43242 534 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 POP7O75817 140 aaKnown RBP16.95■□□□□ 0.3
PHRF1-204ENST00000532550 PRAMEF1O95521 474 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 MSH3P20585 1137 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 CSF2RBP32927 897 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 SLC19A1P41440 591 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 UBE2IP63279 158 aaKnown RBP16.95■□□□□ 0.3
PHRF1-204ENST00000532550 SNAP47Q5SQN1 464 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 SEL1L2Q5TEA6 688 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 WASH2PQ6VEQ5 465 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 CCDC81Q6ZN84 652 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 C11orf96Q7Z7L8 435 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 SLC35B2Q8TB61 432 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 ZNF514Q96K75 400 aaPredicted RBP16.95■□□□□ 0.3
PHRF1-204ENST00000532550 TAAR9Q96RI9 348 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 TMEM121Q9BTD3 319 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 TBC1D10AQ9BXI6 508 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 ARNT2Q9HBZ2 717 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 WASH6PQ9NQA3 447 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 ZNF624Q9P2J8 865 aaPredicted RBP16.95■□□□□ 0.3
PHRF1-204ENST00000532550 PDP2Q9P2J9 529 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 R3HDM2Q9Y2K5 976 aaKnown RBP16.95■□□□□ 0.3
PHRF1-204ENST00000532550 SSUH2Q9Y2M2 353 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 KCTD3Q9Y597 815 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 PCDHB11Q9Y5F2 797 aa16.95■□□□□ 0.3
PHRF1-204ENST00000532550 TCRBV7S2A1N4TA0A589 114 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 GAPDHSO14556 408 aaPredicted RBP16.94■□□□□ 0.3
PHRF1-204ENST00000532550 GPR39O43194 453 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 SRP72O76094 671 aaKnown RBP16.94■□□□□ 0.3
PHRF1-204ENST00000532550 FGF3P11487 239 aaPredicted RBP16.94■□□□□ 0.3
PHRF1-204ENST00000532550 AKT1P31749 480 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 STIP1P31948 543 aaKnown RBP16.94■□□□□ 0.3
PHRF1-204ENST00000532550 HADHAP40939 763 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 HALP42357 657 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 DRG2P55039 364 aaKnown RBP16.94■□□□□ 0.3
PHRF1-204ENST00000532550 VAC14Q08AM6 782 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 MSLNQ13421 630 aaPredicted RBP16.94■□□□□ 0.3
PHRF1-204ENST00000532550 LONRF2Q1L5Z9 754 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 P3H1Q32P28 736 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 AGAP9Q5VTM2 703 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 DENND5AQ6IQ26 1287 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 TMEM26Q6ZUK4 368 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 CXorf40BQ96DE9 158 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 CCNL2Q96S94 520 aaPredicted RBP16.94■□□□□ 0.3
PHRF1-204ENST00000532550 LRRC40Q9H9A6 602 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 UCK1Q9HA47 277 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 SMOXQ9NWM0 555 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 FKBPLQ9UIM3 349 aa16.94■□□□□ 0.3
PHRF1-204ENST00000532550 LILRA5A6NI73 299 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 PRR19A6NJB7 356 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 OR2AG2A6NM03 316 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 C9orf172C9J069 976 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 METTL18O95568 372 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 LIPCP11150 499 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 AMD1P17707 334 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 CD82P27701 267 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 CA5AP35218 305 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 CTSCP53634 463 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 GDF10P55107 478 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 TMPRSS15P98073 1019 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 RPS6KA1Q15418 735 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 TGIF1Q15583 401 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 ZFAND4Q86XD8 727 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 FAM129CQ86XR2 697 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 PLXDC1Q8IUK5 500 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 RBM12BQ8IXT5 1001 aaKnown RBP16.93■□□□□ 0.3
PHRF1-204ENST00000532550 KLHDC8BQ8IXV7 354 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 OR13C4Q8NGS5 318 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 SGF29Q96ES7 293 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 DCUN1D1Q96GG9 259 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 C19orf43Q9BQ61 176 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 FRMD8P1Q9BZ68 369 aaPredicted RBP16.93■□□□□ 0.3
PHRF1-204ENST00000532550 POT1Q9NUX5 634 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 SLC39A1Q9NY26 324 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 FOXJ2Q9P0K8 574 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 CRLS1Q9UJA2 301 aa16.93■□□□□ 0.3
PHRF1-204ENST00000532550 OR52A4PA6NMU1 304 aa16.92■□□□□ 0.3
PHRF1-204ENST00000532550 EFCAB7A8K855 629 aa16.92■□□□□ 0.3
PHRF1-204ENST00000532550 UBXN7O94888 489 aa16.92■□□□□ 0.3
PHRF1-204ENST00000532550 CCDC175P0C221 793 aa16.92■□□□□ 0.3
PHRF1-204ENST00000532550 RALBP11234 206 aa16.92■□□□□ 0.3
PHRF1-204ENST00000532550 BRAFP15056 766 aa16.92■□□□□ 0.3
PHRF1-204ENST00000532550 TPH1P17752 444 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms