RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 KCNF1Q9H3M0 494 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 ETNK1Q9HBU6 452 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 WASH6PQ9NQA3 447 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 OCIAD1Q9NX40 245 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 PISDQ9UG56 409 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 ACSL6Q9UKU0 697 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 PPP2R2CQ9Y2T4 447 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 AAR2Q9Y312 384 aaKnown RBP10.48□□□□□ -0.73
CD44-227ENST00000528086 BSNQ9UPA5 3926 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 CFAP46Q8IYW2 2715 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 SPTBP11277 2137 aa10.48□□□□□ -0.73
CD44-227ENST00000528086 IGLV3-16A0A075B6K0 115 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 MROH6A6NGR9 719 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 OR2AG2A6NM03 316 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 KRT86O43790 486 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 PRAMEF10O60809 474 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 POP7O75817 140 aaKnown RBP10.47□□□□□ -0.73
CD44-227ENST00000528086 SRP72O76094 671 aaKnown RBP10.47□□□□□ -0.73
CD44-227ENST00000528086 AP2A1O95782 977 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 XRCC1P18887 633 aaPredicted RBP10.47□□□□□ -0.73
CD44-227ENST00000528086 ABCG1P45844 678 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 GFERP55789 205 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 PCBP4P57723 403 aaKnown RBP10.47□□□□□ -0.73
CD44-227ENST00000528086 PPP1CAP62136 330 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 DMPKQ09013 629 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 SNX1Q13596 522 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 SEPT7Q16181 437 aaKnown RBP10.47□□□□□ -0.73
CD44-227ENST00000528086 PHF19Q5T6S3 580 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 AGAP9Q5VTM2 703 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 TMEM220Q6QAJ8 160 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 DTX1Q86Y01 620 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 REXO1L1PQ8IX06 675 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 ZNF248Q8NDW4 579 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 OR4D9Q8NGE8 314 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 USP7Q93009 1102 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 ZNF778Q96MU6 729 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 TSGA10Q9BZW7 698 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 SPRY4Q9C004 299 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 CPNE5Q9HCH3 593 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 THSD1Q9NS62 852 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 KCNK4Q9NYG8 393 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.47□□□□□ -0.73
CD44-227ENST00000528086 PCDHGA7Q9Y5G6 932 aa10.47□□□□□ -0.73
CD44-227ENST00000528086 SNRNP200O75643 2136 aaKnown RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 KIR2DS5A0A0G2JLQ3 304 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 A0A0G2JNG1 304 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 CCDC78A2IDD5 438 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 OR51F1A6NGY5 319 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 KIR2DS3K7RE56 304 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 NVLO15381 856 aaKnown RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 PPFIA2O75334 1257 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 SUN1O94901 812 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 RBMS1P29558 406 aaKnown RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 CXCR5P32302 372 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 RPL22P35268 128 aaKnown RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 CETN2P41208 172 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 MLLT3P42568 568 aaPredicted RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 KCNJ1P48048 391 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 EIF3IQ13347 325 aaKnown RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 POU6F1Q14863 301 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 KIR2DS5Q14953 304 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 RPS6KA1Q15418 735 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 CLPPQ16740 277 aaPredicted RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 INSCQ1MX18 579 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 P3H1Q32P28 736 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 MAP9Q49MG5 647 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 CCDC38Q502W7 563 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 LDLRAP1Q5SW96 308 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 ZDHHC20Q5W0Z9 365 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 METRNLQ641Q3 311 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 TMEM71Q6P5X7 295 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 ARHGEF18Q6ZSZ5 1173 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 TMEM26Q6ZUK4 368 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 DET1Q7L5Y6 550 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 ZFAND4Q86XD8 727 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 TRAPPC5Q8IUR0 188 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 PRELID2Q8N945 189 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 CCDC112Q8NEF3 446 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 SPDYE1Q8NFV5 336 aaPredicted RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 OR52K1Q8NGK4 314 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 OR13J1Q8NGT2 312 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 JPH3Q8WXH2 748 aaPredicted RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 RSC1A1Q92681 617 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 CDKN2AIPNLQ96HQ2 116 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 C19orf43Q9BQ61 176 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 OSGEPL1Q9H4B0 414 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 ASB8Q9H765 288 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 SLC40A1Q9NP59 571 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 NLE1Q9NVX2 485 aaPredicted RBP10.46□□□□□ -0.73
CD44-227ENST00000528086 SLC2A6Q9UGQ3 507 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 PKP3Q9Y446 797 aa10.46□□□□□ -0.73
CD44-227ENST00000528086 MN1Q10571 1320 aaPredicted RBP10.45□□□□□ -0.74
CD44-227ENST00000528086 TCRBV7S3A2A0A539 114 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 GOLGA6L9A6NEM1 432 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 LILRA5A6NI73 299 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 OR5K4A6NMS3 321 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 C2orf81A6NN90 581 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 H7C0S8 307 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 KLK10O43240 276 aa10.45□□□□□ -0.74
CD44-227ENST00000528086 STK10O94804 968 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms