RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 OR8K5Q8NH50 307 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 TDRD7Q8NHU6 1098 aaKnown RBP3.76□□□□□ -1.81
CD44-217ENST00000525348 FAM76AQ8TAV0 307 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 GRAPLQ8TC17 118 aaPredicted RBP3.76□□□□□ -1.81
CD44-217ENST00000525348 FCAMRQ8WWV6 532 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 C1orf74Q96LT6 269 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 DUX3Q96PT4 197 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 F2RL3Q96RI0 385 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 GFI1Q99684 422 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 LITAFQ99732 161 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 CCDC94Q9BW85 323 aaPredicted RBP3.76□□□□□ -1.81
CD44-217ENST00000525348 TRPC7Q9HCX4 862 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 TMEM184BQ9Y519 407 aaPredicted RBP3.76□□□□□ -1.81
CD44-217ENST00000525348 LAMC3Q9Y6N6 1575 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 MRC2Q9UBG0 1479 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 KANSL1LA0AUZ9 987 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 J3KRW8 73 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 LETM1O95202 739 aaPredicted RBP3.75□□□□□ -1.81
CD44-217ENST00000525348 EIF2S1P05198 315 aaKnown RBP3.75□□□□□ -1.81
CD44-217ENST00000525348 CAPN2P17655 700 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 PAX7P23759 505 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 HRH2P25021 359 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 KRT9P35527 623 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 TERF1P54274 439 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 ZBED6P86452 979 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 MBTD1Q05BQ5 628 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 TMEM198Q66K66 360 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 SLC35E4Q6ICL7 350 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 NCEH1Q6PIU2 408 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 GLDNQ6ZMI3 551 aaPredicted RBP3.75□□□□□ -1.81
CD44-217ENST00000525348 PXKQ7Z7A4 578 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 RNF168Q8IYW5 571 aaPredicted RBP3.75□□□□□ -1.81
CD44-217ENST00000525348 OXNAD1Q96HP4 312 aaPredicted RBP3.75□□□□□ -1.81
CD44-217ENST00000525348 C17orf77Q96MU5 243 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 C7orf26Q96N11 449 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 SLX1AQ9BQ83 275 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 SIL1Q9H173 461 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 UPF2Q9HAU5 1272 aaKnown RBP3.75□□□□□ -1.81
CD44-217ENST00000525348 EPB41L5Q9HCM4 733 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 SETD4Q9NVD3 440 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 FAM118AQ9NWS6 357 aa3.75□□□□□ -1.81
CD44-217ENST00000525348 UBA2Q9UBT2 640 aaPredicted RBP3.75□□□□□ -1.81
CD44-217ENST00000525348 KIF16BQ96L93 1317 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 NCAPD3P42695 1498 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 ARAP1Q96P48 1450 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 LIPT2A6NK58 231 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 CHD1O14646 1710 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 MAP2K7O14733 419 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 ZNF217O75362 1048 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 NDUFS3O75489 264 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 SKILP12757 684 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 SELLP14151 372 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 CSF2RAP15509 400 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 ZNF23P17027 643 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 GALCP54803 685 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 ACVR2BQ13705 512 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 C14orf177Q52M58 125 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 ARHGAP11AQ6P4F7 1023 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 CEACAM20Q6UY09 585 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 PLEKHM3Q6ZWE6 761 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 RPAINQ86UA6 219 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 TTC30BQ8N4P2 665 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 GBGT1Q8N5D6 347 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 EMC1Q8N766 993 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 TRPC4APQ8TEL6 797 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 DNAAF4Q8WXU2 420 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 ARHGEF2Q92974 986 aaKnown RBP3.74□□□□□ -1.81
CD44-217ENST00000525348 ELMOD3Q96FG2 381 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 SENP5Q96HI0 755 aaPredicted RBP3.74□□□□□ -1.81
CD44-217ENST00000525348 SEMA3CQ99985 751 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 RRP7BPQ9NSQ0 103 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 MAP3K20Q9NYL2 800 aaKnown RBP3.74□□□□□ -1.81
CD44-217ENST00000525348 ZNF624Q9P2J8 865 aaPredicted RBP3.74□□□□□ -1.81
CD44-217ENST00000525348 WDR62O43379 1518 aa3.74□□□□□ -1.81
CD44-217ENST00000525348 ATAD2BQ9ULI0 1458 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 A0A0G2JNG1 304 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 A0A1W2PPI3 338 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 HMGB1P1B2RPK0 211 aaPredicted RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 SMAD9O15198 467 aaKnown RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 SYNCRIPO60506 623 aaKnown RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 DAB1O75553 588 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 TSHBP01222 138 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 TUBBP07437 444 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 CCDC172P0C7W6 258 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 HSPA1AP0DMV8 641 aaKnown RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 HSPA1BP0DMV9 641 aaKnown RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 PEX19P40855 299 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 CD81P60033 236 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 TUBB4BP68371 445 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 GOLGA8DPQ0D2H9 430 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 EIF4A2Q14240 407 aaKnown RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 KIR2DS3Q14952 304 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 KIR2DS5Q14953 304 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 NAB2Q15742 525 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 TMEM30BQ3MIR4 351 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 TECRLQ5HYJ1 363 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 FBXL22Q6P050 247 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 SLC27A1Q6PCB7 646 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 CFAP77Q6ZQR2 320 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 CCDC190Q86UF4 302 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms