RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 TSSK1BQ9BXA7 367 aa12.9□□□□□ -0.34
CPNE3-205ENST00000522240 TEX101Q9BY14 249 aa12.9□□□□□ -0.34
CPNE3-205ENST00000522240 WDR26Q9H7D7 661 aa12.9□□□□□ -0.34
CPNE3-205ENST00000522240 CNOT10Q9H9A5 744 aaKnown RBP12.9□□□□□ -0.34
CPNE3-205ENST00000522240 MBNL1Q9NR56 388 aaKnown RBP12.9□□□□□ -0.34
CPNE3-205ENST00000522240 PHPT1Q9NRX4 125 aaPredicted RBP12.9□□□□□ -0.34
CPNE3-205ENST00000522240 SPATA6Q9NWH7 488 aaPredicted RBP12.9□□□□□ -0.34
CPNE3-205ENST00000522240 KLHL42Q9P2K6 505 aa12.9□□□□□ -0.34
CPNE3-205ENST00000522240 TLK1Q9UKI8 766 aa12.9□□□□□ -0.34
CPNE3-205ENST00000522240 MED16Q9Y2X0 877 aa12.9□□□□□ -0.34
CPNE3-205ENST00000522240 OAS3Q9Y6K5 1087 aaKnown RBP12.9□□□□□ -0.34
CPNE3-205ENST00000522240 GPR89AB7ZAQ6 455 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 E5RI56 91 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 COPEO14579 308 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 INPP4BO15327 924 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 PHGDHO43175 533 aaKnown RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 PI15O43692 258 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 NIPSNAP2O75323 286 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 FTH1P02794 183 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 IGHV4-34P06331 123 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 HOXC4P09017 264 aaPredicted RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 GSTM1P09488 218 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 GPR89BP0CG08 455 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 MYCLP1P12525 358 aaPredicted RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 TDGF1P13385 188 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 ZNF37AP17032 561 aaPredicted RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 AKT2P31751 481 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 HPDP32754 393 aaPredicted RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 PRLHRP49683 370 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 KPNA2P52292 529 aaKnown RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 KIAA1024LP59773 190 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 TIAL1Q01085 375 aaKnown RBP eCLIP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 GSTM4Q03013 218 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 GTF2H3Q13889 308 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 PDE1CQ14123 709 aaPredicted RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 INSCQ1MX18 579 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 BCL7AQ4VC05 210 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 KHDC1Q4VXA5 237 aaKnown RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 SLC36A4Q6YBV0 504 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 KDM7AQ6ZMT4 941 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 RAPH1Q70E73 1250 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 CLEC14AQ86T13 490 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 CEP97Q8IW35 865 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 CADM4Q8NFZ8 388 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 FAM76AQ8TAV0 307 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 KLK6Q92876 244 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 ZNF514Q96K75 400 aaPredicted RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 GPR174Q9BXC1 333 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 C6orf106Q9H6K1 298 aaPredicted RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 GPAMQ9HCL2 828 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 TRIM39Q9HCM9 518 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 LATS2Q9NRM7 1088 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 OGFRQ9NZT2 677 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 TRMT6Q9UJA5 497 aaKnown RBP12.89□□□□□ -0.35
CPNE3-205ENST00000522240 PRSS21Q9Y6M0 314 aa12.89□□□□□ -0.35
CPNE3-205ENST00000522240 FAM186AA6NE01 2351 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 TMEM120BA0PK00 339 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 GOLGA8RI6L899 631 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 EIF3FO00303 357 aaPredicted RBP12.88□□□□□ -0.35
CPNE3-205ENST00000522240 FPGTO14772 594 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 RAD51BO15315 384 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 TM9SF1O15321 606 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 SLC31A1O15431 190 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 LAMTOR5O43504 91 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 SGTAO43765 313 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 MAGEC1O60732 1142 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 MTX2O75431 263 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 ZWINTO95229 277 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 CREB1P16220 341 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 SAT1P21673 171 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 CRHR1P34998 444 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 SKIV2L2P42285 1042 aaKnown RBP12.88□□□□□ -0.35
CPNE3-205ENST00000522240 TMEM115Q12893 351 aaPredicted RBP12.88□□□□□ -0.35
CPNE3-205ENST00000522240 INPP5AQ14642 412 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 TSNAXIP1Q2TAA8 658 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 USP39Q53GS9 565 aaKnown RBP12.88□□□□□ -0.35
CPNE3-205ENST00000522240 KYAT3Q6YP21 454 aaKnown RBP12.88□□□□□ -0.35
CPNE3-205ENST00000522240 ADGRG6Q86SQ4 1221 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 TBC1D1Q86TI0 1168 aaPredicted RBP12.88□□□□□ -0.35
CPNE3-205ENST00000522240 PIM3Q86V86 326 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 WDR5BQ86VZ2 330 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 CLDN19Q8N6F1 224 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 TMEM145Q8NBT3 493 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 FAM174AQ8TBP5 190 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 CD200R1Q8TD46 325 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 TSNARE1Q96NA8 513 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 GPR21Q99679 349 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 SELENOSQ9BQE4 189 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 IQCGQ9H095 443 aaKnown RBP12.88□□□□□ -0.35
CPNE3-205ENST00000522240 VPS11Q9H270 941 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 SYTL2Q9HCH5 934 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 DCDC2Q9UHG0 476 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.88□□□□□ -0.35
CPNE3-205ENST00000522240 ACOT9Q9Y305 439 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 DHRS7Q9Y394 339 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 WDR87Q6ZQQ6 2873 aa12.88□□□□□ -0.35
CPNE3-205ENST00000522240 EML5Q05BV3 1969 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 CCDC189A1A4V9 331 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 PRAMEF26H0Y7S4 382 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 CACNB4O00305 520 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms