RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CHST8Q9H2A9 424 aa19.92■□□□□ 0.78
SQSTM1-215ENST00000514093 WASH6PQ9NQA3 447 aa19.92■□□□□ 0.78
SQSTM1-215ENST00000514093 ASF1BQ9NVP2 202 aa19.92■□□□□ 0.78
SQSTM1-215ENST00000514093 SLC5A6Q9Y289 635 aa19.92■□□□□ 0.78
SQSTM1-215ENST00000514093 PCDHGB7Q9Y5F8 929 aa19.92■□□□□ 0.78
SQSTM1-215ENST00000514093 LGALS16A8MUM7 142 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 ANKRD66B4E2M5 251 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 MATN3O15232 486 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 CPNE3O75131 537 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 SCRG1O75711 98 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 SLC4A1P02730 911 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 HLA-DQB2P05538 268 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 IDSP22304 550 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 CA4P22748 312 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 CES1P23141 567 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 ITGA1P56199 1179 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 RPL26P61254 145 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 ACY1Q03154 408 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 GALNT3Q14435 633 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 GPR19Q15760 415 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 PLEKHN1Q494U1 663 aaPredicted RBP19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 KHDC1Q4VXA5 237 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 PRAMEF17Q5VTA0 474 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 PPP1R2P3Q6NXS1 205 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 TMEM126BQ8IUX1 230 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 CISD2Q8N5K1 135 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 GLYATL1Q969I3 302 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 TIMM29Q9BSF4 260 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 NUP62CLQ9H1M0 184 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 SEMA5BQ9P283 1151 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 SNX7Q9UNH6 387 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 RPL26L1Q9UNX3 145 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 SHOC2Q9UQ13 582 aa19.91■□□□□ 0.78
SQSTM1-215ENST00000514093 DDX3YO15523 660 aaKnown RBP19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 CD48P09326 243 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 PIRTP0C851 137 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 ELAVL4P26378 380 aaKnown RBP19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 CD86P42081 329 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 KRT81Q14533 505 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 BPHLQ86WA6 291 aaPredicted RBP19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 RBM12BQ8IXT5 1001 aaKnown RBP19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 ENDOVQ8N8Q3 282 aaKnown RBP19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 GPR150Q8NGU9 434 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 ERGIC2Q96RQ1 377 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 RANBP9Q96S59 729 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 ZSCAN5AQ9BUG6 496 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 NUP85Q9BW27 656 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 ZFYVE1Q9HBF4 777 aa19.9■□□□□ 0.78
SQSTM1-215ENST00000514093 SSU72P8A0A1W2PR75 194 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 GPR89AB7ZAQ6 455 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 CDK14O94921 469 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 JCHAINP01591 159 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 MMP2P08253 660 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 GPR89BP0CG08 455 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 FECHP22830 423 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 VARSP26640 1264 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 GALNT2Q10471 571 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 CCDC122Q5T0U0 273 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 AGAP9Q5VTM2 703 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 IZUMO3Q5VZ72 239 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 LRRC49Q8IUZ0 686 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 TRAM1L1Q8N609 369 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 TTC13Q8NBP0 860 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 GPR83Q9NYM4 423 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 LIMA1Q9UHB6 759 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 G3BP2Q9UN86 482 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 SCINQ9Y6U3 715 aa19.89■□□□□ 0.77
SQSTM1-215ENST00000514093 UBA6A0AVT1 1052 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 ANKUB1A6NFN9 424 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 F5H423 210 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 HNRNPH3P31942 346 aaKnown RBP19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 DNTTIP2Q5QJE6 756 aaKnown RBP19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 TIGD7Q6NT04 549 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 FBXO38Q6PIJ6 1188 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 WASH2PQ6VEQ5 465 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 ZNF517Q6ZMY9 492 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 ZNF571Q7Z3V5 609 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 C11orf96Q7Z7L8 435 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 D2HGDHQ8N465 521 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 ZBTB2Q8N680 514 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 BTBD6Q96KE9 485 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 HAUS4Q9H6D7 363 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 KCND1Q9NSA2 647 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 TCFL5Q9UL49 500 aa19.88■□□□□ 0.77
SQSTM1-215ENST00000514093 DDX3XO00571 662 aaKnown RBP eCLIP19.87■□□□□ 0.776e-16■■■■■ 35.6
SQSTM1-215ENST00000514093 KLK3P07288 261 aaPredicted RBP19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 PRF1P14222 555 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 CCNCP24863 283 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 VAV2P52735 878 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 TUBB4BP68371 445 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 HSD11B2P80365 405 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 SLC25A11Q02978 314 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 CDK18Q07002 472 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 TUBB2AQ13885 445 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 IFI16Q16666 785 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 ZRANB3Q5FWF4 1079 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 PLEKHS1Q5SXH7 462 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 NCBP2-AS2Q69YL0 99 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 IQCKQ8N0W5 287 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 TEKT4Q8WW24 435 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms