RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 FBP2O00757 339 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 RFPL1O75677 317 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 CSTF1Q05048 431 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 SREBF2Q12772 1141 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 REP15Q6BDI9 236 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ZNF773Q6PK81 442 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 GET4Q7L5D6 327 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 NIPA1Q7RTP0 329 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 MIB1Q86YT6 1006 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 GHDCQ8N2G8 530 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 C12orf50Q8NA57 414 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 AP2M1Q96CW1 435 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 HERC2P3Q9BVR0 1158 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 TDRD3Q9H7E2 651 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 STARD7Q9NQZ5 370 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 NUFIP1Q9UHK0 495 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 PCDHGB5Q9Y5G0 923 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ERVK-7P63135 1459 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 TEX13CA0A0J9YWL9 993 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 APBA3O96018 575 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 RYKP34925 604 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ZNF81P51508 661 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 SRSF11Q05519 484 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 EFEMP1Q12805 493 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 NDUFA9Q16795 377 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM98CQ17RN3 349 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 OGFOD2Q6N063 350 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 BRSK2Q8IWQ3 736 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 LRTOMTQ8WZ04 291 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 SCRN2Q96FV2 425 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ZDHHC15Q96MV8 337 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 DUSP9Q99956 384 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 MAPKAP1Q9BPZ7 522 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 TMEM246Q9BRR3 403 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ZFP14Q9HCL3 533 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ERVK-5Q9HDB9 667 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 PCDHB16Q9NRJ7 776 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 FARSBQ9NSD9 589 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ZFP57Q9NU63 452 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 MAFFQ9ULX9 164 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 PCYT1BQ9Y5K3 369 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 LAMC1P11047 1609 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 SAMD9Q5K651 1589 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 PRAMEF12O95522 483 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 PGAM2P15259 253 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 AXLP30530 894 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ATXN1P54253 815 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 BNIP3Q12983 259 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 RPA4Q13156 261 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 LAPTM5Q13571 262 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 PTGR1Q14914 329 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 RABL3Q5HYI8 236 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 RBFAQ8N0V3 343 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 TMEM86AQ8N2M4 240 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 TERB2Q8NHR7 220 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ART5Q96L15 291 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 MARK4Q96L34 752 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 FEM1AQ9BSK4 669 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 KANSL3Q9P2N6 904 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ZNF69Q9UC07 566 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 POLR3HQ9Y535 204 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 A0A1W2PRQ8 180 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ABCB7O75027 752 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 RAB36O95755 333 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 TRBC1P01850 177 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM86B2P0C5J1 330 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 HSD3B1P14060 373 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CHKAP35790 457 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 GMPSP49915 693 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 SLC18A2Q05940 514 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 SGCGQ13326 291 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 NPTX1Q15818 432 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 LRRC70Q7Z2Q7 622 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 RANBP3LQ86VV4 465 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ZDHHC21Q8IVQ6 265 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 TTLL6Q8N841 843 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 OR2L8Q8NGY9 312 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 OR4C6Q8NH72 309 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ADAMTS15Q8TE58 950 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 KLHL6Q8WZ60 621 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 RAD51AP1Q96B01 352 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 AURKBQ96GD4 344 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 C16orf58Q96GQ5 468 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ZNF668Q96K58 619 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM84BQ96KN1 310 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 PSKH2Q96QS6 385 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ORAI2Q96SN7 254 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 SYT15Q9BQS2 421 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 PLEKHA1Q9HB21 404 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM105AQ9NUU6 356 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 hCG_1818297A0A087WSY0 165 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 OR10H2O60403 315 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 SRPRAP08240 638 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 GKN3PP0CG01 181 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CLUP10909 449 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 BMP6P22004 513 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ADH6P28332 368 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CPT1AP50416 773 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 MANFP55145 182 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms