RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TNFAIP8O95379 198 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 PRAMEF1O95521 474 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 OTCP00480 354 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 TRBC1P01850 177 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 LINC00032P0C843 101 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 ZCCHC18P0CG32 403 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 FCGR1AP12314 374 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 SERPINA4P29622 427 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 CDKN1CP49918 316 aaPredicted RBP11.84□□□□□ -0.51
NUP54-202ENST00000502850 FOXA1P55317 472 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 SLC7A9P82251 487 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 GRB7Q14451 532 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 SHHQ15465 462 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 AASDHQ4L235 1098 aaPredicted RBP11.84□□□□□ -0.51
NUP54-202ENST00000502850 ATP6AP1LQ52LC2 224 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 ZDHHC20Q5W0Z9 365 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 GRAMD4Q6IC98 578 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 RNF165Q6ZSG1 346 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 LYSMD3Q7Z3D4 306 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 TMEM150AQ86TG1 271 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 SYVN1Q86TM6 617 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 AHI1Q8N157 1196 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 CBARPQ8N350 705 aaPredicted RBP11.84□□□□□ -0.51
NUP54-202ENST00000502850 ZNF557Q8N988 423 aaPredicted RBP11.84□□□□□ -0.51
NUP54-202ENST00000502850 TMEM102Q8N9M5 508 aaPredicted RBP11.84□□□□□ -0.51
NUP54-202ENST00000502850 DDI1Q8WTU0 396 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 PIH1D2Q8WWB5 315 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 ZNF689Q96CS4 500 aaPredicted RBP11.84□□□□□ -0.51
NUP54-202ENST00000502850 ALG14Q96F25 216 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 FAM126AQ9BYI3 521 aaPredicted RBP11.84□□□□□ -0.51
NUP54-202ENST00000502850 YIPF3Q9GZM5 350 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 TUBB1Q9H4B7 451 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 BPIFA1Q9NP55 256 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 ARMC1Q9NVT9 282 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 KLHL42Q9P2K6 505 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 BTRCQ9Y297 605 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 HELZP42694 1942 aaKnown RBP11.83□□□□□ -0.52
NUP54-202ENST00000502850 SMIM31A0A1B0GVY4 71 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 A0A1W2PQ67 120 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 LRRC14BA6NHZ5 514 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 EIF3FO00303 357 aaPredicted RBP11.83□□□□□ -0.52
NUP54-202ENST00000502850 HNRNPRO43390 633 aaKnown RBP11.83□□□□□ -0.52
NUP54-202ENST00000502850 OR1I1O60431 355 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 EEDO75530 441 aaKnown RBP11.83□□□□□ -0.52
NUP54-202ENST00000502850 SLC22A3O75751 556 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 GLUD1P00367 558 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 CKMP06732 381 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 GPIP06744 558 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 FESP07332 822 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 PCSK2P16519 638 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 PSMA4P25789 261 aaKnown RBP11.83□□□□□ -0.52
NUP54-202ENST00000502850 ITGB8P26012 769 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 SPAM1P38567 509 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 PIK3CGP48736 1102 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 RALGDSQ12967 914 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 SMU1Q2TAY7 513 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 C6orf10Q5SRN2 563 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 IL23RQ5VWK5 629 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 LCN8Q6JVE9 175 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 TTC23LQ6PF05 361 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 UGT2A3Q6UWM9 527 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 LAYNQ6UX15 382 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 CCDC149Q6ZUS6 474 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 HTR3DQ70Z44 454 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 Q7L0L9 218 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 SERPINA9Q86WD7 417 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 LILRA2Q8N149 483 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 ELMOD1Q8N336 334 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 PACRGLQ8N7B6 248 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 FAM156AQ8NDB6 213 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 WBP2Q969T9 261 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 ATP6V1E2Q96A05 226 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 LRRC58Q96CX6 371 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 KCNA7Q96RP8 456 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 LYSMD1Q96S90 227 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 OSBPL11Q9BXB4 747 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 SARS2Q9NP81 518 aaKnown RBP11.83□□□□□ -0.52
NUP54-202ENST00000502850 ACTR3BQ9P1U1 418 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 EIF2B4Q9UI10 523 aaKnown RBP11.83□□□□□ -0.52
NUP54-202ENST00000502850 IKZF3Q9UKT9 509 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 OARD1Q9Y530 152 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 AP4B1Q9Y6B7 739 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 SZT2Q5T011 3432 aa11.83□□□□□ -0.52
NUP54-202ENST00000502850 TRAV19A0A0A6YYK7 116 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 TRBV5-4A0A0C4DH59 114 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 GLYATL1P3A0A0U1RQE8 302 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 C1orf232A0A0U1RR37 186 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 FAM234BA2RU67 622 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 CCDC154A6NI56 674 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 NCF1BA6NI72 391 aaPredicted RBP11.82□□□□□ -0.52
NUP54-202ENST00000502850 NCF1CA8MVU1 366 aaPredicted RBP11.82□□□□□ -0.52
NUP54-202ENST00000502850 PPP6CO00743 305 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 GREM1O60565 184 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 RNASEH2AO75792 299 aaKnown RBP11.82□□□□□ -0.52
NUP54-202ENST00000502850 LRG1P02750 347 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 CBSLP0DN79 551 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 NCF1P14598 390 aaPredicted RBP11.82□□□□□ -0.52
NUP54-202ENST00000502850 CAPN3P20807 821 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 IL10P22301 178 aa11.82□□□□□ -0.52
NUP54-202ENST00000502850 ACRV1P26436 265 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms