RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 SP3Q02447 781 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 PLOD1Q02809 727 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TWF1Q12792 350 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 FUT11Q495W5 492 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 LHX8Q68G74 356 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 KRT80Q6KB66 452 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TAS2R42Q7RTR8 314 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 EFL1Q7Z2Z2 1120 aaKnown RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CMTR2Q8IYT2 770 aaKnown RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TMEM199Q8N511 208 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 DDI1Q8WTU0 396 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TSPEARQ8WU66 669 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TFAP2CQ92754 450 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 ZNF382Q96SR6 550 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 HBEGFQ99075 208 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 VN1R3Q9BXE9 311 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 P2RY12Q9H244 342 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CAAP1Q9H8G2 361 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 PNPLA3Q9NST1 481 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 MTRRQ9UBK8 725 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 PIKFYVEQ9Y2I7 2098 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 TCRBV5S2A0A599 114 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ARVCFO00192 962 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 GIPC1O14908 333 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 INPP4BO15327 924 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ESR1P03372 595 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 CTPS1P17812 591 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 CALRP27797 417 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 CA5AP35218 305 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 LIPEQ05469 1076 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 GRIK2Q13002 908 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 CYP51A1Q16850 503 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 PDCD4Q53EL6 469 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 C6orf136Q5SQH8 315 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ATXN7L2Q5T6C5 722 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 INTS11Q5TA45 600 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 AP1ARQ63HQ0 302 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 B3GNT6Q6ZMB0 384 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 Q6ZSR9 355 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 PTRH1Q86Y79 214 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 FIBCD1Q8N539 461 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 FAM47BQ8NA70 645 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 FNDC5Q8NAU1 212 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 PROKR1Q8TCW9 393 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 OVCA2Q8WZ82 227 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 CCT7Q99832 543 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 KCTD14Q9BQ13 255 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 TMEM175Q9BSA9 504 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 TSEN34Q9BSV6 310 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ZNF106Q9H2Y7 1883 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 SMOXQ9NWM0 555 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 SMPD4Q9NXE4 827 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 IL17CQ9P0M4 197 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 SRRDQ9UH36 339 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 MYRFQ9Y2G1 1151 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 FCF1Q9Y324 198 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ZNF711Q9Y462 761 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 PCDHB9Q9Y5E1 797 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ST14Q9Y5Y6 855 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 H3BSA7 217 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 PFDN6O15212 129 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 SYNCRIPO60506 623 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ALPIP09923 528 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ZNF23P17027 643 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 IL10P22301 178 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 FASP25445 335 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 PTGER3P43115 390 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 TUFMP49411 452 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 CCT8P50990 548 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 ADARP55265 1226 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 NAA20P61599 178 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 PLD1Q13393 1074 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 AARS2Q5JTZ9 985 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 BORAQ6PGQ7 559 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 SLC2A7Q6PXP3 512 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 SBSNQ6UWP8 590 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 LYSMD3Q7Z3D4 306 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 MFSD2AQ8NA29 543 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 GOLM1Q8NBJ4 401 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 TMIGD2Q96BF3 282 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 RMND5BQ96G75 393 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 KLF16Q9BXK1 252 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 MRPL9Q9BYD2 267 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 NUDT4Q9NZJ9 180 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 LEF1Q9UJU2 399 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 OAZ3Q9UMX2 235 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 CEPT1Q9Y6K0 416 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 LAMA2P24043 3122 aaKnown RBP9.74□□□□□ -0.85
CLIP1-204ENST00000501271 OBSL1O75147 1896 aa9.74□□□□□ -0.85
CLIP1-204ENST00000501271 FAM234BA2RU67 622 aa9.73□□□□□ -0.85
CLIP1-204ENST00000501271 FZD6O60353 706 aa9.73□□□□□ -0.85
CLIP1-204ENST00000501271 EFEMP2O95967 443 aa9.73□□□□□ -0.85
CLIP1-204ENST00000501271 ALDH1A1P00352 501 aa9.73□□□□□ -0.85
CLIP1-204ENST00000501271 GPIP06744 558 aa9.73□□□□□ -0.85
CLIP1-204ENST00000501271 CAPN1P07384 714 aa9.73□□□□□ -0.85
CLIP1-204ENST00000501271 CDH2P19022 906 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-204ENST00000501271 PCSK6P29122 969 aa9.73□□□□□ -0.85
CLIP1-204ENST00000501271 ARL1P40616 181 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-204ENST00000501271 CDH15P55291 814 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms