RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ARHGAP1Q07960 439 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 C2orf27AQ580R0 203 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 MED27Q6P2C8 311 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 ZNF567Q8N184 647 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 FBXW8Q8N3Y1 598 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 OR7A2PQ8NGA2 310 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 KLK6Q92876 244 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 MYDGFQ969H8 173 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 SRMSQ9H3Y6 488 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TRPS1Q9UHF7 1281 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 OR1F1O43749 312 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 UGT2B17O75795 530 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TM7SF2O76062 418 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 IFNGP01579 166 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 GDI1P31150 447 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 DGKEP52429 567 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TUBA1BP68363 451 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 C2orf80Q0P641 193 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 ZSWIM7Q19AV6 140 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 KLHL17Q6TDP4 642 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TUBA1AQ71U36 451 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 DNAJB7Q7Z6W7 309 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 POC5Q8NA72 575 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 AUTS2Q8WXX7 1259 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 SLC9A6Q92581 669 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 DNASE1L2Q92874 299 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 SLC47A1Q96FL8 570 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 CLK4Q9HAZ1 481 aaKnown RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 FZD10Q9ULW2 581 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TMED5Q9Y3A6 229 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TELO2Q9Y4R8 837 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 CCL22O00626 93 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TNFRSF21O75509 655 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 NRG1Q02297 640 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 BTN2A1Q7KYR7 527 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 POP5Q969H6 163 aaKnown RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 EXOSC8Q96B26 276 aaKnown RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 IPPKQ9H8X2 491 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 AP4B1Q9Y6B7 739 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 ENPP3O14638 875 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 GOT2P00505 430 aaKnown RBP13.02□□□□□ -0.32
PTPRF-215ENST00000496447 CFIP05156 583 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 CCND3P30281 292 aaPredicted RBP13.02□□□□□ -0.32
PTPRF-215ENST00000496447 MPP1Q00013 466 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 EGFLAMQ63HQ2 1017 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 ATG14Q6ZNE5 492 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 PROSER1Q86XN7 944 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 HMGB4Q8WW32 186 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 NXNL1Q96CM4 212 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 LRRC4CQ9HCJ2 640 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 NECTIN3Q9NQS3 549 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 MTRRQ9UBK8 725 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 ERGIC3Q9Y282 383 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 Q9Y3F1 56 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 GPC6Q9Y625 555 aaPredicted RBP13.02□□□□□ -0.32
PTPRF-215ENST00000496447 YJEFN3A6XGL0 299 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 ADSLP30566 484 aaPredicted RBP13.02□□□□□ -0.32
PTPRF-215ENST00000496447 CSKP41240 450 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 LEMD2Q8NC56 503 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 VANGL1Q8TAA9 524 aaPredicted RBP13.02□□□□□ -0.32
PTPRF-215ENST00000496447 SCAMP5Q8TAC9 235 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 ZCCHC10Q8TBK6 192 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 CDADC1Q9BWV3 514 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 NUAK2Q9H093 628 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 YIPF1Q9Y548 306 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 HEBP2Q9Y5Z4 205 aa13.02□□□□□ -0.32
PTPRF-215ENST00000496447 BPGMP07738 259 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 KIR3DL1P43629 444 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 RAPSNQ13702 412 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 CNPY1Q3B7I2 92 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 ABRAXAS1Q6UWZ7 409 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 PRR23BQ6ZRT6 265 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 ADCY4Q8NFM4 1077 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 XAGE5Q8WWM1 108 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 NOL11Q9H8H0 719 aaKnown RBP13.02□□□□□ -0.33
PTPRF-215ENST00000496447 ABI3Q9P2A4 366 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 FKBPLQ9UIM3 349 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 C2CD4BA6NLJ0 364 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 TRAFD1O14545 582 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-215ENST00000496447 CD48P09326 243 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 RCVRNP35243 200 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 TIE1P35590 1138 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 HSPA7P48741 367 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 TUBA3CQ13748 450 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 HNRNPDQ14103 355 aaKnown RBP13.02□□□□□ -0.33
PTPRF-215ENST00000496447 PDGFRLQ15198 375 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 SLC25A24Q6NUK1 477 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 RNF19BQ6ZMZ0 732 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 TRABD2AQ86V40 505 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 PEX5LQ8IYB4 626 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 EEF1AKMT1Q8WVE0 214 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 SLC44A1Q8WWI5 657 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 OSBPL7Q9BZF2 842 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 EBF2Q9HAK2 575 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 APOBEC3GQ9HC16 384 aaKnown RBP13.02□□□□□ -0.33
PTPRF-215ENST00000496447 CACNG4Q9UBN1 327 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 STON1Q9Y6Q2 735 aa13.02□□□□□ -0.33
PTPRF-215ENST00000496447 A0A0J9YYE9 177 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 SEC24AO95486 1093 aa13.01□□□□□ -0.33
PTPRF-215ENST00000496447 MPSTP25325 297 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms