RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ADAMTS6Q9UKP5 1117 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 ANGPTL2Q9UKU9 493 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 OAS3Q9Y6K5 1087 aaKnown RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 MUC3AQ02505 3323 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 A8MT66 165 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 H3BMM5 538 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 RNASEH1O60930 286 aaKnown RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 LEFTY1O75610 366 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 HSPA4LO95757 839 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 RBP1P09455 135 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 PKMP14618 531 aaKnown RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 FOSL2P15408 326 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 LHCGRP22888 699 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 WASP42768 502 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 TFF2Q03403 129 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 ZNF234Q14588 700 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 FNDC3BQ53EP0 1204 aaKnown RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 SFT2D3Q587I9 215 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 ARSIQ5FYB1 569 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 AARS2Q5JTZ9 985 aaKnown RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 KLC3Q6P597 504 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 DEFB107AQ8IZN7 70 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 SLC44A3Q8N4M1 653 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 WFIKKN2Q8TEU8 576 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 EZH1Q92800 747 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 SCRN2Q96FV2 425 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 OR52B2Q96RD2 323 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 SLC30A3Q99726 388 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 ECSITQ9BQ95 431 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 SIKE1Q9BRV8 207 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 ALG9Q9H6U8 611 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 WDR55Q9H6Y2 383 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 IL26Q9NPH9 171 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 KLHL42Q9P2K6 505 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 SCOCQ9UIL1 159 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 IKZF3Q9UKT9 509 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 VPS9D1Q9Y2B5 631 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 TRBV5-4A0A0C4DH59 114 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 NIPSNAP2O75323 286 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 AOC1P19801 751 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 CD9P21926 228 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 MPSTP25325 297 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 PEX2P28328 305 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 POLE2P56282 527 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 FOXD4Q12950 439 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 TRMT5Q32P41 509 aaKnown RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 PRPF38BQ5VTL8 546 aaKnown RBP12.03□□□□□ -0.48
HDAC6-230ENST00000488543 PAQR3Q6TCH7 311 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 GDPD4Q6W3E5 623 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 TPRG1Q6ZUI0 275 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 TAS2R42Q7RTR8 314 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 GATA6Q92908 595 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 KLHL32Q96NJ5 620 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 GPR21Q99679 349 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 CDH19Q9H159 772 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 HEBP1Q9NRV9 189 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 CACNA2D2Q9NY47 1150 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 SARDHQ9UL12 918 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 SLC30A1Q9Y6M5 507 aa12.03□□□□□ -0.48
HDAC6-230ENST00000488543 PRAMEF1O95521 474 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 ITGAXP20702 1163 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 SERPINB5P36952 375 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 IL12RB1P42701 662 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 PTGER3P43115 390 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 RECQLP46063 649 aaPredicted RBP12.02□□□□□ -0.48
HDAC6-230ENST00000488543 COPAP53621 1224 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 ADARP55265 1226 aaKnown RBP12.02□□□□□ -0.48
HDAC6-230ENST00000488543 ST8SIA6P61647 398 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 AP2B1P63010 937 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 RAD51Q06609 339 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 PDAP1Q13442 181 aaKnown RBP12.02□□□□□ -0.48
HDAC6-230ENST00000488543 OR4D1Q15615 310 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 DNAL1Q4LDG9 190 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 ARL13AQ5H913 290 aaPredicted RBP12.02□□□□□ -0.48
HDAC6-230ENST00000488543 C6orf163Q5TEZ5 329 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 EGFLAMQ63HQ2 1017 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 CBARPQ8N350 705 aaPredicted RBP12.02□□□□□ -0.48
HDAC6-230ENST00000488543 HLA-CQ95604 372 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 DNAJC28Q9NX36 388 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 TAS2R13Q9NYV9 303 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 FAM50BQ9Y247 325 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 RAP2CQ9Y3L5 183 aa12.02□□□□□ -0.48
HDAC6-230ENST00000488543 ANKRD12Q6UB98 2062 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 NARSO43776 548 aaKnown RBP12.02□□□□□ -0.49
HDAC6-230ENST00000488543 NPHS1O60500 1241 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 LYNP07948 512 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 SRPRAP08240 638 aaKnown RBP12.02□□□□□ -0.49
HDAC6-230ENST00000488543 C1SP09871 688 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 AQP4P55087 323 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 SEC13P55735 322 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 SMAD4Q13485 552 aaKnown RBP12.02□□□□□ -0.49
HDAC6-230ENST00000488543 CHRNA6Q15825 494 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 LRRC66Q68CR7 880 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 SERPINA13PQ6UXR4 307 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 TRIM67Q6ZTA4 783 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 RFLNAQ6ZTI6 216 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 USP45Q70EL2 814 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 SNX20Q7Z614 316 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 SERPINA9Q86WD7 417 aa12.02□□□□□ -0.49
HDAC6-230ENST00000488543 STK40Q8N2I9 435 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms