RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CYP19A1P11511 503 aaPredicted RBP5.06□□□□□ -1.6
UPF3B-203ENST00000478840 KCNA5P22460 613 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 HSPA4P34932 840 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 GDF5P43026 501 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 TAS2R38P59533 333 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 SEC61BP60468 96 aaKnown RBP5.06□□□□□ -1.6
UPF3B-203ENST00000478840 ZXDAP98168 799 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 ACSM1Q08AH1 577 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 HSPB3Q12988 150 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 GPR18Q14330 331 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 HNF4GQ14541 408 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 SMN1Q16637 294 aaKnown RBP5.06□□□□□ -1.6
UPF3B-203ENST00000478840 KLHL26Q53HC5 615 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 KRTCAP3Q53RY4 240 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 C18orf63Q68DL7 685 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 IYDQ6PHW0 289 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 BRAT1Q6PJG6 821 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 PPP1R21Q6ZMI0 780 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 TMEM173Q86WV6 379 aaPredicted RBP5.06□□□□□ -1.6
UPF3B-203ENST00000478840 ADGRG3Q86Y34 549 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 MFN1Q8IWA4 741 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 PRSS3P2Q8NHM4 247 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 FIBINQ8TAL6 211 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 THAP6Q8TBB0 222 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 MAGEC3Q8TD91 643 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 KCNE4Q8WWG9 221 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 ROBO4Q8WZ75 1007 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 NXNL1Q96CM4 212 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 RMDN2Q96LZ7 410 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 CCDC114Q96M63 670 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 OLFM1Q99784 485 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 PLAC1Q9HBJ0 212 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 MCM9Q9NXL9 1143 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 DDX43Q9NXZ2 648 aaKnown RBP5.06□□□□□ -1.6
UPF3B-203ENST00000478840 PADI3Q9ULW8 664 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 HS3ST3B1Q9Y662 390 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 WDR33Q9C0J8 1336 aaKnown RBP5.05□□□□□ -1.6
UPF3B-203ENST00000478840 A0A0B4J293 547 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 A0A0U1RQK1 487 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 FEZF1A0PJY2 475 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ZNF320A2RRD8 509 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 TRIM64A6NGJ6 449 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 TRIM64BA6NI03 449 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ENO4A6NNW6 628 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 HEPACAM2A8MVW5 462 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 TRIM77I1YAP6 450 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 J3QR06 171 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ANKRD28O15084 1053 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 TO15178 435 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 SSX4O60224 188 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 MED24O75448 989 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 CELA2AP08217 269 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ADRA2CP18825 462 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 TNFRSF1BP20333 461 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ITGB8P26012 769 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 RPL3P39023 403 aaKnown RBP5.05□□□□□ -1.6
UPF3B-203ENST00000478840 RFX5P48382 616 aaPredicted RBP5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ENTPD1P49961 510 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ZNF75DP51815 510 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 HNRNPKP61978 463 aaKnown RBP eCLIP5.05□□□□□ -1.6
UPF3B-203ENST00000478840 SSBP2P81877 361 aaPredicted RBP5.05□□□□□ -1.6
UPF3B-203ENST00000478840 AMZ1Q400G9 498 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 RAB6CQ53S08 254 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 MANEAQ5SRI9 462 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 RNASEH2BQ5TBB1 312 aaKnown RBP5.05□□□□□ -1.6
UPF3B-203ENST00000478840 OTUD1Q5VV17 481 aaPredicted RBP5.05□□□□□ -1.6
UPF3B-203ENST00000478840 KRT39Q6A163 491 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 SLC36A4Q6YBV0 504 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 CCDC91Q7Z6B0 441 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 CTU1Q7Z7A3 348 aaKnown RBP5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ABI3BPQ7Z7G0 1075 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 UNC45BQ8IWX7 931 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 PM20D2Q8IYS1 436 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 CCDC170Q8IYT3 715 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 CEP57L1Q8IYX8 460 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 CARNMT1Q8N4J0 409 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 TMCO5AQ8N6Q1 288 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 MIGA1Q8NAN2 632 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 OR2AK2Q8NG84 335 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 GRK7Q8WTQ7 553 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 DNAAF4Q8WXU2 420 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 EXT2Q93063 718 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 CHFRQ96EP1 664 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 OR6C1Q96RD1 312 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 KXD1Q9BQD3 176 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 RAB6CQ9H0N0 254 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 WNT5BQ9H1J7 359 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 SLC24A2Q9UI40 661 aa5.05□□□□□ -1.6
UPF3B-203ENST00000478840 ARHGEF17Q96PE2 2063 aaPredicted RBP5.04□□□□□ -1.6
UPF3B-203ENST00000478840 A0A1W2PP11 408 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 A0A1W2PPQ1 181 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 A4D1N5 150 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 TMEM221A6NGB7 291 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 BECN2A8MW95 431 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 IFIT3O14879 490 aaKnown RBP5.04□□□□□ -1.6
UPF3B-203ENST00000478840 ASAP2O43150 1006 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 TSPAN1O60635 241 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 NUDT3O95989 172 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 FGBP02675 491 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 CYP1A2P05177 515 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms