RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PPP1CAP62136 330 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 UBXN1Q04323 297 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 QPCTQ16769 361 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 AGAP9Q5VTM2 703 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 IZUMO3Q5VZ72 239 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 SLC34A3Q8N130 599 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 ARRDC2Q8TBH0 407 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 ADAMTS17Q8TE56 1095 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 MAML1Q92585 1016 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 SYT11Q9BT88 431 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 AMACRQ9UHK6 382 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 SCRG1O75711 98 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 TCF4P15884 667 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 NIPAL4Q0D2K0 466 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 PLEKHN1Q494U1 663 aaPredicted RBP16.83■□□□□ 0.28
VIM-204ENST00000478746 ZRANB3Q5FWF4 1079 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 CCDC122Q5T0U0 273 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 ALS2CLQ60I27 953 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 TIGD7Q6NT04 549 aaPredicted RBP16.83■□□□□ 0.28
VIM-204ENST00000478746 KLHL35Q6PF15 583 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 CERS6Q6ZMG9 384 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 MED25Q71SY5 747 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 KMT5CQ86Y97 462 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 TMEM126BQ8IUX1 230 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 CISD2Q8N5K1 135 aaKnown RBP16.83■□□□□ 0.28
VIM-204ENST00000478746 GLYATL1Q969I3 302 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 MAP3K3Q99759 626 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 ZSCAN5AQ9BUG6 496 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 CHST8Q9H2A9 424 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 PCDH18Q9HCL0 1135 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 KCND1Q9NSA2 647 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 ASF1BQ9NVP2 202 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 FANCLQ9NW38 375 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 GPR83Q9NYM4 423 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 MYO1AQ9UBC5 1043 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 SNX7Q9UNH6 387 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 SCINQ9Y6U3 715 aa16.83■□□□□ 0.28
VIM-204ENST00000478746 ANKUB1A6NFN9 424 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 LGALS16A8MUM7 142 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 VEGFDO43915 354 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 CDK14O94921 469 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 RAB40ALP0C0E4 278 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 FECHP22830 423 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 CCNCP24863 283 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 HALP42357 657 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 HSD11B2P80365 405 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 GPS2Q13227 327 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 ELOAQ14241 798 aaKnown RBP16.82■□□□□ 0.28
VIM-204ENST00000478746 ZNF517Q6ZMY9 492 aaPredicted RBP16.82■□□□□ 0.28
VIM-204ENST00000478746 ZNF547Q8IVP9 402 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 IQCKQ8N0W5 287 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 TRAM1L1Q8N609 369 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 TMEM102Q8N9M5 508 aaPredicted RBP16.82■□□□□ 0.28
VIM-204ENST00000478746 GLIS1Q8NBF1 620 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 GPR26Q8NDV2 337 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 ANKRD20A12PQ8NF67 263 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 TEKT4Q8WW24 435 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 ZNF653Q96CK0 615 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 EID2BQ96D98 161 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 ERGIC2Q96RQ1 377 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 SMAD5Q99717 465 aaKnown RBP16.82■□□□□ 0.28
VIM-204ENST00000478746 ADGRE3Q9BY15 652 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 ZFYVE1Q9HBF4 777 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 MRPL47Q9HD33 250 aaKnown RBP16.82■□□□□ 0.28
VIM-204ENST00000478746 WDR37Q9Y2I8 494 aa16.82■□□□□ 0.28
VIM-204ENST00000478746 UBA6A0AVT1 1052 aaPredicted RBP16.81■□□□□ 0.28
VIM-204ENST00000478746 MTX2O75431 263 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 GZMAP12544 262 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 VCLP18206 1134 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 VAV2P52735 878 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 RRADP55042 308 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 ITGA1P56199 1179 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 RIPPLY3P57055 190 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 GSDMDP57764 484 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 TUBB4BP68371 445 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 GALNT2Q10471 571 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 TUBB2AQ13885 445 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 KRT81Q14533 505 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 IFI16Q16666 785 aaKnown RBP16.81■□□□□ 0.28
VIM-204ENST00000478746 PDPK2PQ6A1A2 396 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 TXNRD3NBQ6F5E7 133 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 D2HGDHQ8N465 521 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 TTC30BQ8N4P2 665 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 ENDOVQ8N8Q3 282 aaKnown RBP16.81■□□□□ 0.28
VIM-204ENST00000478746 SLC38A9Q8NBW4 561 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 OR8K5Q8NH50 307 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 TUBB2BQ9BVA1 445 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 NUP85Q9BW27 656 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 RAD18Q9NS91 495 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 C5AR2Q9P296 337 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 TCFL5Q9UL49 500 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 FBN2P35556 2912 aa16.81■□□□□ 0.28
VIM-204ENST00000478746 POLQO75417 2590 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 MEN1O00255 615 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 HLA-DQB2P05538 268 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 DCDC1P59894 354 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 MMRN1Q13201 1228 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 RAPSNQ13702 412 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 GPR19Q15760 415 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 DNTTIP2Q5QJE6 756 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms