RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 CACNA1GO43497 2377 aa21.41■■□□□ 1.02
COL9A3-211ENST00000477612 PIKFYVEQ9Y2I7 2098 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 LILRA5A6NI73 299 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 GPR39O43194 453 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 KLK10O43240 276 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 DUX1O43812 170 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 SRP72O76094 671 aaKnown RBP21.4■■□□□ 1.02
COL9A3-211ENST00000477612 BRAFP15056 766 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 SLC19A1P41440 591 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 OASLQ15646 514 aaKnown RBP21.4■■□□□ 1.02
COL9A3-211ENST00000477612 P3H1Q32P28 736 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 SEL1L2Q5TEA6 688 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 BROXQ5VW32 411 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 ZNF761Q86XN6 746 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-211ENST00000477612 SLC13A5Q86YT5 568 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-211ENST00000477612 SNRNP27Q8WVK2 155 aaKnown RBP21.4■■□□□ 1.02
COL9A3-211ENST00000477612 ZNF514Q96K75 400 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-211ENST00000477612 CCDC74BQ96LY2 380 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 OSGEPL1Q9H4B0 414 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 KCTD3Q9Y597 815 aa21.4■■□□□ 1.02
COL9A3-211ENST00000477612 MGAQ8IWI9 3026 aa21.39■■□□□ 1.02
COL9A3-211ENST00000477612 PSMD3O43242 534 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 LDB2O43679 373 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 PRAMEF1O95521 474 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 VCLP18206 1134 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 IDSP22304 550 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 ZNF140P52738 457 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-211ENST00000477612 CTSCP53634 463 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 CLN3Q13286 438 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 NFATC2Q13469 925 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 SPARCL1Q14515 664 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 PLA2G4EQ3MJ16 856 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 TRAPPC5Q8IUR0 188 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 RCBTB1Q8NDN9 531 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 AHCYL2Q96HN2 611 aaKnown RBP21.39■■□□□ 1.01
COL9A3-211ENST00000477612 ASB8Q9H765 288 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 LRRC40Q9H9A6 602 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 TMEM9Q9P0T7 183 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 FKBPLQ9UIM3 349 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 DNAJC16Q9Y2G8 782 aa21.39■■□□□ 1.01
COL9A3-211ENST00000477612 SDK2Q58EX2 2172 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 H7C0S8 307 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 LIASO43766 372 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 AP2A1O95782 977 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 CCDC175P0C221 793 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 HADHAP40939 763 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 TMPRSS3P57727 454 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 TMEM220Q6QAJ8 160 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 TMEM26Q6ZUK4 368 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 GPR155Q7Z3F1 870 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 ARHGAP22Q7Z5H3 698 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 AMZ2Q86W34 360 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 OR13C4Q8NGS5 318 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 FCRL3Q96P31 734 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-211ENST00000477612 POT1Q9NUX5 634 aa21.38■■□□□ 1.01
COL9A3-211ENST00000477612 KLHL33A6NCF5 533 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 C9orf172C9J069 976 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 POP7O75817 140 aaKnown RBP21.37■■□□□ 1.01
COL9A3-211ENST00000477612 VIPP01282 170 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 FGF3P11487 239 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-211ENST00000477612 CCL4P13236 92 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 PSMA3P25788 255 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 CD82P27701 267 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 CCZ1BP86790 482 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 CCZ1P86791 482 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-211ENST00000477612 RPS6KA1Q15418 735 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 LONRF2Q1L5Z9 754 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 SOWAHCQ53LP3 525 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-211ENST00000477612 RBM12BQ8IXT5 1001 aaKnown RBP21.37■■□□□ 1.01
COL9A3-211ENST00000477612 AGBL5Q8NDL9 886 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 USP7Q93009 1102 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 LINC00615Q96LM1 132 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-211ENST00000477612 TBC1D10AQ9BXI6 508 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 PCDHGA3Q9Y5H0 932 aa21.37■■□□□ 1.01
COL9A3-211ENST00000477612 PRAMEF33A0A0G2JMD5 474 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 TEX51A0A1B0GUA7 166 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 ERI2A8K979 691 aaKnown RBP21.36■■□□□ 1.01
COL9A3-211ENST00000477612 PDZK1P1A8MUH7 402 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 IQCJ-SCHIP1C9J366 451 aaPredicted RBP21.36■■□□□ 1.01
COL9A3-211ENST00000477612 PRAMEF10O60809 474 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 LIPCP11150 499 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 MSH3P20585 1137 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 RPL10P27635 214 aaKnown RBP21.36■■□□□ 1.01
COL9A3-211ENST00000477612 MAPK10P53779 464 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 CLCA4Q14CN2 919 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 JAMLQ86YT9 394 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 ATG4AQ8WYN0 398 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 TAAR9Q96RI9 348 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 SLC40A1Q9NP59 571 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 WDR37Q9Y2I8 494 aa21.36■■□□□ 1.01
COL9A3-211ENST00000477612 MN1Q10571 1320 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-211ENST00000477612 TRBV5-4A0A0C4DH59 114 aa21.35■■□□□ 1.01
COL9A3-211ENST00000477612 B4E171 279 aa21.35■■□□□ 1.01
COL9A3-211ENST00000477612 SGTAO43765 313 aa21.35■■□□□ 1.01
COL9A3-211ENST00000477612 MPSTP25325 297 aa21.35■■□□□ 1.01
COL9A3-211ENST00000477612 CSTF2P33240 577 aaKnown RBP eCLIP21.35■■□□□ 1.01
COL9A3-211ENST00000477612 TSPAN7P41732 249 aa21.35■■□□□ 1.01
COL9A3-211ENST00000477612 CXADRP78310 365 aa21.35■■□□□ 1.01
COL9A3-211ENST00000477612 SIX1Q15475 284 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-211ENST00000477612 GPR33Q49SQ1 333 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms