RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ZFHX4Q86UP3 3567 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 NBEAQ8NFP9 2946 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 LOC400499M0QZD8 3231 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 LRRD1A4D1F6 860 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 NPIPB15A6NHN6 443 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 ZNF487B1APH4 448 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 AKR1B15C9JRZ8 316 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 TNFRSF10CO14798 259 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 RRP8O43159 456 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 BRINP1O60477 761 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 CSO75390 466 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 TCEA3O75764 348 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 MYCLP1P12525 358 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 CCNB1P14635 433 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 GM2AP17900 193 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 TGM2P21980 687 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 LHCGRP22888 699 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 KDELR1P24390 212 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 ACTN2P35609 894 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 EPHB1P54762 984 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 TCEA2Q15560 299 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 CNGA3Q16281 694 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 TSNAXIP1Q2TAA8 658 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 COL28A1Q2UY09 1125 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 ODF2Q5BJF6 829 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 DENND2CQ68D51 928 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 C19orf48Q6RUI8 117 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 RNF111Q6ZNA4 994 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 RBM44Q6ZP01 1051 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 VSIG1Q86XK7 387 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 CPNE8Q86YQ8 564 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 KYQ8NBH2 561 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 HNRNPLLQ8WVV9 542 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 OR1E3Q8WZA6 343 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 FUBP1Q96AE4 644 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 GRAMD1AQ96CP6 724 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 HDAC11Q96DB2 347 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 DTD2Q96FN9 168 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 SCRN2Q96FV2 425 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 PDXPQ96GD0 296 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 TSGA13Q96PP4 275 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 MCCC1Q96RQ3 725 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 RBM15Q96T37 977 aaKnown RBP eCLIP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 CHP1Q99653 195 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 PHPT1Q9NRX4 125 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 SPTLC3Q9NUV7 552 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 RBM22Q9NW64 420 aaKnown RBP eCLIP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 SIRPGQ9P1W8 387 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 GULP1Q9UBP9 304 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 RALYQ9UKM9 306 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 DNPEPQ9ULA0 475 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 INTUQ9ULD6 942 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 PADI4Q9UM07 663 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 GPR34Q9UPC5 381 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 PPIL1Q9Y3C6 166 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 TTLL3Q9Y4R7 772 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 PCDHB1Q9Y5F3 818 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 RAI2Q9Y5P3 530 aa6.78□□□□□ -1.32
CCDC88A-213ENST00000476903 SCN8AQ9UQD0 1980 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 PRSS38A1L453 326 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 GOLGA6CA6NDK9 693 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 GOLGA6BA6NDN3 693 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 TMEM202A6NGA9 273 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 FFAR3O14843 346 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 TLX3O43711 291 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 USP12O75317 370 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 MTA2O94776 668 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 MPOP05164 745 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 PDHA1P08559 390 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 GOLGA6DP0CG33 693 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 ZFXP17010 805 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 ZNF30P17039 623 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 CTPS1P17812 591 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 TEAD1P28347 426 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 EIF2S3P41091 472 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC1A1P43005 524 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 ABCG1P45844 678 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 RPL26P61254 145 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 GABREP78334 506 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 CDK3Q00526 305 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 DSC2Q02487 901 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 GBE1Q04446 702 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 DPTQ07507 201 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 PPIDQ08752 370 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 SPIDRQ14159 915 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 KIR3DS1Q14943 382 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 ISXQ2M1V0 245 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 TBC1D25Q3MII6 688 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 LRRC38Q5VT99 294 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 KCTD16Q68DU8 428 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 RAET1GQ6H3X3 334 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 SARM1Q6SZW1 724 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 CRTC1Q6UUV9 634 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 Q6ZVL8 140 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 HSD11B1LQ7Z5J1 315 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 TAF8Q7Z7C8 310 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 HEATR4Q86WZ0 1026 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 CCDC13Q8IYE1 715 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 LSMEM2Q8N112 164 aa6.77□□□□□ -1.33
CCDC88A-213ENST00000476903 PELI3Q8N2H9 469 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms