RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 OR52A4PA6NMU1 304 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PSTPIP1O43586 416 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CST8O60676 142 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 LCA5LO95447 670 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 FGF5P12034 268 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNF28P17035 718 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TYRP1P17643 537 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RPL10P27635 214 aaKnown RBP12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 OAS2P29728 719 aaKnown RBP12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CCR10P46092 362 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 LEPRP48357 1165 aaKnown RBP12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 DYNLT1P63172 113 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KCNAB2Q13303 367 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MSLNQ13421 630 aaPredicted RBP12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TFDP2Q14188 446 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 IL11RAQ14626 422 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NOMO1Q15155 1222 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SLC1A5Q15758 541 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 INSCQ1MX18 579 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SIRPB2Q5JXA9 342 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SPOCD1Q6ZMY3 1216 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNF567Q8N184 647 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 BRSK1Q8TDC3 778 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RSC1A1Q92681 617 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 OSGEPL1Q9H4B0 414 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KLHL3Q9UH77 587 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 DNAJC16Q9Y2G8 782 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 DNMT3AQ9Y6K1 912 aaPredicted RBP12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 LRRK2Q5S007 2527 aa12.03□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 hCG_1818297A0A087WSY0 165 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MTSS1O43312 755 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KIF1CO43896 1103 aaKnown RBP12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 UGT1A9O60656 530 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RECKO95980 971 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 UGT1A6P19224 532 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 NFKB1P19838 968 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 IDSP22304 550 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 UGT1A1P22309 533 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 UGT1A4P22310 534 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CHRNA4P43681 627 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MAPK9P45984 424 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CAPZBP47756 277 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CTSCP53634 463 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 DRG2P55039 364 aaKnown RBP12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SH3BP2P78314 561 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CDC20Q12834 499 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GPR18Q14330 331 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CHRNA6Q15825 494 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PLA2G4EQ3MJ16 856 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TFDP3Q5H9I0 405 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZDHHC20Q5W0Z9 365 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CCDC70Q6NSX1 233 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KATNAL2Q8IYT4 538 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ESX1Q8N693 406 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RASGEF1AQ8N9B8 481 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 DDHD1Q8NEL9 900 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SLC41A2Q96JW4 573 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 VAT1Q99536 393 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GORASP1Q9BQQ3 440 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TRIM4Q9C037 500 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 UGT1A7Q9HAW7 530 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 UGT1A10Q9HAW8 530 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 UGT1A8Q9HAW9 530 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SMOXQ9NWM0 555 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 HACD3Q9P035 362 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RPS6KL1Q9Y6S9 549 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PIKFYVEQ9Y2I7 2098 aa12.02□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 AGAP14A8MT82 685 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 HACD1B0YJ81 288 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GPR39O43194 453 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZRANB2O95218 330 aaKnown RBP eCLIP12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 AMD1P17707 334 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 NELFEP18615 380 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 HLA-DPA1P20036 260 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FECHP22830 423 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MC1RQ01726 317 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MPP3Q13368 585 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SEPT7Q16181 437 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RPE65Q16518 533 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 METRNLQ641Q3 311 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RANBP10Q6VN20 620 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FAM83HQ6ZRV2 1179 aaPredicted RBP12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 AMZ2Q86W34 360 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RCOR2Q8IZ40 523 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 STARD8Q92502 1023 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KIAA1143Q96AT1 154 aaPredicted RBP12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TGM7Q96PF1 710 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 QKIQ96PU8 341 aaKnown RBP eCLIP12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZMYND15Q9H091 742 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GOLPH3Q9H4A6 298 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PCDHGA6Q9Y5G7 932 aa12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MRPS18BQ9Y676 258 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 IGHV5-51A0A0C4DH38 117 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PDZK1P1A8MUH7 402 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ARHGAP6O43182 974 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SGTAO43765 313 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SPOPO43791 374 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SPAG6O75602 509 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms