RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PNPLA2Q96AD5 504 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 TSGA13Q96PP4 275 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 NUP85Q9BW27 656 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 XPO4Q9C0E2 1151 aaKnown RBP12.36□□□□□ -0.43
SKA3-206ENST00000475251 ARFGAP3Q9NP61 516 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 FGF21Q9NSA1 209 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 IP6K2Q9UHH9 426 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 TNRC6AQ8NDV7 1962 aaKnown RBP12.36□□□□□ -0.43
SKA3-206ENST00000475251 IGHV5-51A0A0C4DH38 117 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 TLCD2A6NGC4 264 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 LRRC53A6NM62 1247 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 OR52A4PA6NMU1 304 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 SCRG1O75711 98 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 CEACAM4O75871 244 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 HLA-DQB2P05538 268 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 BRAFP15056 766 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 FOLR1P15328 257 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 TCF4P15884 667 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 FECHP22830 423 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 DCTP40126 519 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 RRADP55042 308 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 RPS18P62269 152 aaKnown RBP12.35□□□□□ -0.43
SKA3-206ENST00000475251 TUBB4BP68371 445 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 HSD11B2P80365 405 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 SLC25A11Q02978 314 aaKnown RBP12.35□□□□□ -0.43
SKA3-206ENST00000475251 NIPAL4Q0D2K0 466 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 TUBB2AQ13885 445 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 IHHQ14623 411 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 HADHQ16836 314 aaKnown RBP12.35□□□□□ -0.43
SKA3-206ENST00000475251 TMTC4Q5T4D3 741 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 CCDC183Q5T5S1 534 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 NCBP2-AS2Q69YL0 99 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 FAM199XQ6PEV8 388 aaPredicted RBP12.35□□□□□ -0.43
SKA3-206ENST00000475251 TMEM126BQ8IUX1 230 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 TMEM102Q8N9M5 508 aaPredicted RBP12.35□□□□□ -0.43
SKA3-206ENST00000475251 BRSK1Q8TDC3 778 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 MARVELD3Q96A59 401 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 ZNF830Q96NB3 372 aaPredicted RBP12.35□□□□□ -0.43
SKA3-206ENST00000475251 SRPK1Q96SB4 655 aaKnown RBP12.35□□□□□ -0.43
SKA3-206ENST00000475251 TUBB2BQ9BVA1 445 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 SLC23A2Q9UGH3 650 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 SNX7Q9UNH6 387 aa12.35□□□□□ -0.43
SKA3-206ENST00000475251 UBA6A0AVT1 1052 aaPredicted RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 WIPF3A6NGB9 483 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 TMEM63AO94886 807 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 RAB40ALP0C0E4 278 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 EBLN1P0CF75 366 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 RNF224P0DH78 156 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 IL4RP24394 825 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 PRKCIP41743 596 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 CD86P42081 329 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 PTGIRP43119 386 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 SSR1P43307 286 aaKnown RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 DRG2P55039 364 aaKnown RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 KLHL30Q0D2K2 578 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 MRPL49Q13405 166 aaKnown RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 IL10RAQ13651 578 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 PLCL1Q15111 1095 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 DNTTIP2Q5QJE6 756 aaKnown RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 ZNF648Q5T619 568 aaPredicted RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 ZNF787Q6DD87 383 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 TXNRD3NBQ6F5E7 133 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 SASS6Q6UVJ0 657 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 ZNF517Q6ZMY9 492 aaPredicted RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 MED25Q71SY5 747 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 ZNF571Q7Z3V5 609 aaPredicted RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 TMC3Q7Z5M5 1100 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 TICAM1Q8IUC6 712 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 TRAPPC5Q8IUR0 188 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 MAP7D3Q8IWC1 876 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 CARFQ8N187 725 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 GPR26Q8NDV2 337 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 FAM71BQ8TC56 605 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 HDAC11Q96DB2 347 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 C5orf34Q96MH7 638 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 TTC25Q96NG3 672 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 LRFN5Q96NI6 719 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 VPS35Q96QK1 796 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 RUFY1Q96T51 708 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 ZNF670Q9BS34 389 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 GPR63Q9BZJ6 419 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 ZCCHC2Q9C0B9 1178 aaKnown RBP12.34□□□□□ -0.43
SKA3-206ENST00000475251 ISCUQ9H1K1 167 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 FANCEQ9HB96 536 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 MAGEE1Q9HCI5 957 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 KCND1Q9NSA2 647 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 ANO10Q9NW15 660 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 GPR83Q9NYM4 423 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 AIPL1Q9NZN9 384 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 TMEM63CQ9P1W3 806 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 SLC5A6Q9Y289 635 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 CREBBPQ92793 2442 aa12.34□□□□□ -0.43
SKA3-206ENST00000475251 SHANK1Q9Y566 2161 aa12.33□□□□□ -0.44
SKA3-206ENST00000475251 DDX3XO00571 662 aaKnown RBP eCLIP12.33□□□□□ -0.443e-14■□□□□ 9.2
SKA3-206ENST00000475251 KLHL41O60662 606 aa12.33□□□□□ -0.44
SKA3-206ENST00000475251 ZBTB11O95625 1053 aaPredicted RBP12.33□□□□□ -0.44
SKA3-206ENST00000475251 LDLRP01130 860 aa12.33□□□□□ -0.44
SKA3-206ENST00000475251 VAV2P52735 878 aa12.33□□□□□ -0.44
SKA3-206ENST00000475251 MMRN1Q13201 1228 aa12.33□□□□□ -0.44
SKA3-206ENST00000475251 LAMB3Q13751 1172 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms