RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ANKRD20A2Q5SQ80 823 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 ANKRD20A1Q5TYW2 823 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 AGAP9Q5VTM2 703 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 ANKRD20A3Q5VUR7 823 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 ANKS6Q68DC2 871 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 XKR5Q6UX68 686 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 TMEM26Q6ZUK4 368 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 GLT6D1Q7Z4J2 308 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 KLHDC8BQ8IXV7 354 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 EXD3Q8N9H8 876 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 SGF29Q96ES7 293 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 FICDQ9BVA6 458 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.26■□□□□ 0.51
COL7A1-209ENST00000474432 STN1Q9H668 368 aaKnown RBP18.26■□□□□ 0.51
COL7A1-209ENST00000474432 TRIM10Q9UDY6 481 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 KCTD3Q9Y597 815 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 GLYATL1P3A0A0U1RQE8 302 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 OR52A4PA6NMU1 304 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 STMND1H3BQB6 276 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 RBP3P10745 1247 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 RPL10P27635 214 aaKnown RBP18.25■□□□□ 0.51
COL7A1-209ENST00000474432 PSMB4P28070 264 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 MAPK9P45984 424 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 DRG2P55039 364 aaKnown RBP18.25■□□□□ 0.51
COL7A1-209ENST00000474432 GEMP55040 296 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 GFERP55789 205 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 RWDD2BP57060 319 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 EIF3EP60228 445 aaKnown RBP18.25■□□□□ 0.51
COL7A1-209ENST00000474432 CLCA4Q14CN2 919 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 SEPT7Q16181 437 aaKnown RBP18.25■□□□□ 0.51
COL7A1-209ENST00000474432 MANEAQ5SRI9 462 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 GPRC6AQ5T6X5 926 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 ZDHHC20Q5W0Z9 365 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 DENND5AQ6IQ26 1287 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 FAM83HQ6ZRV2 1179 aaPredicted RBP18.25■□□□□ 0.51
COL7A1-209ENST00000474432 DDHD1Q8NEL9 900 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 BRSK1Q8TDC3 778 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 RTP4Q96DX8 246 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 APOL2Q9BQE5 337 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 EPB41L1Q9H4G0 881 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 APMAPQ9HDC9 416 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 SLC40A1Q9NP59 571 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 WDR70Q9NW82 654 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 SMOXQ9NWM0 555 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 SIDT1Q9NXL6 827 aaKnown RBP18.25■□□□□ 0.51
COL7A1-209ENST00000474432 ARL5AQ9Y689 179 aa18.25■□□□□ 0.51
COL7A1-209ENST00000474432 PDZK1P1A8MUH7 402 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 ANXA9O76027 345 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 DMPKQ09013 629 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 FAM129CQ86XR2 697 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 TRAPPC5Q8IUR0 188 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 CDKL3Q8IVW4 592 aaPredicted RBP18.24■□□□□ 0.51
COL7A1-209ENST00000474432 AVL9Q8NBF6 648 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 GDAP1Q8TB36 358 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 CCDC110Q8TBZ0 833 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 FBXO8Q9NRD0 319 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.24■□□□□ 0.51
COL7A1-209ENST00000474432 KLHL3Q9UH77 587 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 PILRAQ9UKJ1 303 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 PCDHB11Q9Y5F2 797 aa18.24■□□□□ 0.51
COL7A1-209ENST00000474432 DDX3YO15523 660 aaKnown RBP18.23■□□□□ 0.51
COL7A1-209ENST00000474432 KCNN4O15554 427 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 SGTAO43765 313 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 PPFIA2O75334 1257 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 POP7O75817 140 aaKnown RBP18.23■□□□□ 0.51
COL7A1-209ENST00000474432 VIPP01282 170 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 ANKRD34CP0C6C1 535 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 TYRP1P17643 537 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 IDSP22304 550 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 CYP4F2P78329 520 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 XIAPP98170 497 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 TAF1AQ15573 450 aaPredicted RBP18.23■□□□□ 0.51
COL7A1-209ENST00000474432 LDLRAP1Q5SW96 308 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 DCAF12Q5T6F0 453 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 CCDC181Q5TID7 509 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 ITPRIPL1Q6GPH6 555 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 MICALCLQ6ZW33 695 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 TIPARPQ7Z3E1 657 aaKnown RBP18.23■□□□□ 0.51
COL7A1-209ENST00000474432 CCDC112Q8NEF3 446 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 ZNF398Q8TD17 642 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 NAT14Q8WUY8 206 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 C9orf72Q96LT7 481 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 SPATA13Q96N96 652 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 CTRCQ99895 268 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 BAG1Q99933 345 aaPredicted RBP18.23■□□□□ 0.51
COL7A1-209ENST00000474432 FSD1LQ9BXM9 530 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 SLC12A9Q9BXP2 914 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 ASPSCR1Q9BZE9 553 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 POT1Q9NUX5 634 aa18.23■□□□□ 0.51
COL7A1-209ENST00000474432 TLN1Q9Y490 2541 aaKnown RBP18.23■□□□□ 0.51
COL7A1-209ENST00000474432 AGAP14A8MT82 685 aa18.22■□□□□ 0.51
COL7A1-209ENST00000474432 STX7O15400 261 aaKnown RBP18.22■□□□□ 0.51
COL7A1-209ENST00000474432 UBXN7O94888 489 aa18.22■□□□□ 0.51
COL7A1-209ENST00000474432 PLA2G2AP14555 144 aa18.22■□□□□ 0.51
COL7A1-209ENST00000474432 LPOP22079 712 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-209ENST00000474432 LEPRP48357 1165 aaKnown RBP18.22■□□□□ 0.51
COL7A1-209ENST00000474432 NAP1L1P55209 391 aaKnown RBP18.22■□□□□ 0.51
COL7A1-209ENST00000474432 RAB15P59190 212 aa18.22■□□□□ 0.51
COL7A1-209ENST00000474432 KLF1Q13351 362 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-209ENST00000474432 GPR18Q14330 331 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms