RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 MEIS2O14770 477 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 RASGRF2O14827 1237 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 RGS10O43665 173 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 KLHL2O95198 593 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 KCNK5O95279 499 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 RASAL1O95294 804 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 SIX3O95343 332 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 LIPFP07098 398 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 FAM86B2P0C5J1 330 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 SELLP14151 372 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 YY1P25490 414 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 HOXA6P31267 233 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 CHRNA3P32297 505 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 EVI2BP34910 448 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 NUP62P37198 522 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 STARP49675 285 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 KHKP50053 298 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 KIAA1024LP59773 190 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 ARPC4P59998 168 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 DSTNP60981 165 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 LIPEQ05469 1076 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 CCNIQ14094 377 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 GAMTQ14353 236 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 VEPH1Q14D04 833 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 NCF4Q15080 339 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 MED22Q15528 200 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 HYAL4Q2M3T9 481 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 Q3ZCU0 254 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 FSCBQ5H9T9 825 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 ATAD3BQ5T9A4 648 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 DCAF12L1Q5VU92 463 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 AFTPHQ6ULP2 937 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 ERN2Q76MJ5 926 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 RNF44Q7L0R7 432 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 C12orf56Q8IXR9 622 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 KDM1BQ8NB78 822 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 PSMA8Q8TAA3 256 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 CCDC26Q8TAB7 109 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 RSPRY1Q96DX4 576 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 GDAP1L1Q96MZ0 367 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 NR1H4Q96RI1 486 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 SIGLEC11Q96RL6 698 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 FIZ1Q96SL8 496 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 COQ7Q99807 217 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 PHF7Q9BWX1 381 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 CARD6Q9BX69 1037 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 CACNG6Q9BXT2 260 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 TRIM31Q9BZY9 425 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 PNNQ9H307 717 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 TP63Q9H3D4 680 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 TFB2MQ9H5Q4 396 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 LRRC40Q9H9A6 602 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 FBRSL1Q9HCM7 1045 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 AGPAT5Q9NUQ2 364 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 ARHGEF38Q9NXL2 777 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 CD300AQ9UGN4 299 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 ATP6V1HQ9UI12 483 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 DAPP1Q9UN19 280 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 R3HDM2Q9Y2K5 976 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 KCNK7Q9Y2U2 307 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 TEX264Q9Y6I9 313 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 SPACA6W5XKT8 324 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 A0A087WZ62 844 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 LY6G6EA0A0G2JKS1 128 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 TRBC2A0A5B9 178 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 SMIM30A4D0T7 59 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 GSAPA4D1B5 854 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 TTC34A8MYJ7 566 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 MYO1GB0I1T2 1018 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 H3BNX3 289 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 K7ERQ8 282 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 DNALI1O14645 258 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 STX16O14662 325 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 TNPO2O14787 897 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 HDAC3O15379 428 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 KLK10O43240 276 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 TNFSF14O43557 240 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 MTX2O75431 263 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ECDO95905 644 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 AK1P00568 194 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 TGFAP01135 160 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CSF2P04141 144 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 FYNP06241 537 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 APEHP13798 732 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CPN2P22792 545 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CORO1AP31146 461 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CCKARP32238 428 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 HTR2BP41595 481 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 NRIP1P48552 1158 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 LIG4P49917 911 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ARFIP2P53365 341 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 BCAT1P54687 386 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 HSPA14Q0VDF9 509 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 SF3A3Q12874 501 aaKnown RBP eCLIP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 DNAJC3Q13217 504 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 RAB32Q13637 225 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 RAPSNQ13702 412 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CAMK1Q14012 370 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CRYMQ14894 314 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 LARS2Q15031 903 aaKnown RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms