RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 FRMD7Q6ZUT3 714 aa14.07□□□□□ -0.16
USP39-207ENST00000450066 RAB44Q7Z6P3 723 aaPredicted RBP14.07□□□□□ -0.16
USP39-207ENST00000450066 SLC44A3Q8N4M1 653 aa14.07□□□□□ -0.16
USP39-207ENST00000450066 SKA1Q96BD8 255 aa14.07□□□□□ -0.16
USP39-207ENST00000450066 ERP27Q96DN0 273 aa14.07□□□□□ -0.16
USP39-207ENST00000450066 FAM161BQ96MY7 647 aa14.07□□□□□ -0.16
USP39-207ENST00000450066 MYLK2Q9H1R3 596 aa14.07□□□□□ -0.16
USP39-207ENST00000450066 EML4Q9HC35 981 aaKnown RBP14.07□□□□□ -0.16
USP39-207ENST00000450066 DNAJC28Q9NX36 388 aa14.07□□□□□ -0.16
USP39-207ENST00000450066 TMCO1Q9UM00 188 aa14.07□□□□□ -0.16
USP39-207ENST00000450066 MBTPS2O43462 519 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 KLK8O60259 260 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 AP2A2O94973 939 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 ADH1BP00325 375 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 C6P13671 934 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 GFAPP14136 432 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 MPSTP25325 297 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 SERPINB3P29508 390 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 ZBTB16Q05516 673 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 CST6Q15828 149 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 PFKFB4Q16877 469 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 PIP5KL1Q5T9C9 394 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 MAVSQ7Z434 540 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 PLCD3Q8N3E9 789 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 PTGR2Q8N8N7 351 aaPredicted RBP14.06□□□□□ -0.16
USP39-207ENST00000450066 DNASE1L2Q92874 299 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 EXT2Q93063 718 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 GLYATL1Q969I3 302 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 C8orf33Q9H7E9 229 aaPredicted RBP14.06□□□□□ -0.16
USP39-207ENST00000450066 UBE2ZQ9H832 354 aaPredicted RBP14.06□□□□□ -0.16
USP39-207ENST00000450066 KCTD5Q9NXV2 234 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 LIMD1Q9UGP4 676 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 RRP15Q9Y3B9 282 aaKnown RBP14.06□□□□□ -0.16
USP39-207ENST00000450066 FADS3Q9Y5Q0 445 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 PIAS3Q9Y6X2 628 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 CKAP5Q14008 2032 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 SUPT3HB4E1H0 165 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 SLCO1B7G3V0H7 640 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 MATN2O00339 956 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 SUPT3HO75486 399 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 RECQL5O94762 991 aaPredicted RBP14.06□□□□□ -0.16
USP39-207ENST00000450066 CBSLP0DN79 551 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 MSH3P20585 1137 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 C5AR1P21730 350 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 NTSR1P30989 418 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 DRD3P35462 400 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 CBSP35520 551 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 DPTQ07507 201 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 BNIP1Q12981 228 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 SPRED3Q2MJR0 410 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 TMEM196Q5HYL7 178 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 SDE2Q6IQ49 451 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 CLNKQ7Z7G1 428 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 ADAMTSL2Q86TH1 951 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 NLRP8Q86W28 1048 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 GPSM1Q86YR5 675 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 MYO1HQ8N1T3 1032 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 FBXO39Q8N4B4 442 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 ERLEC1Q96DZ1 483 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 GABRG3Q99928 467 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 GSTO2Q9H4Y5 243 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 VTI1BQ9UEU0 232 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 ZDHHC2Q9UIJ5 367 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 ZFP69BQ9UJL9 534 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 SLC12A4Q9UP95 1085 aa14.06□□□□□ -0.16
USP39-207ENST00000450066 ANKRD65E5RJM6 399 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 EIF3FO00303 357 aaPredicted RBP14.05□□□□□ -0.16
USP39-207ENST00000450066 MID1O15344 667 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 HDAC3O15379 428 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 AP1G1O43747 822 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 LZTS3O60299 673 aaPredicted RBP14.05□□□□□ -0.16
USP39-207ENST00000450066 MMP20O60882 483 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 DRD1P21728 446 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 AOAHP28039 575 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 IDH3AP50213 366 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 UNC50Q53HI1 259 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 C2orf27AQ580R0 203 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 ACSBG2Q5FVE4 666 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 AADATQ8N5Z0 425 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 CXorf40AQ8TE69 158 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 NUS1Q96E22 293 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 RILPQ96NA2 401 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 EBF4Q9BQW3 602 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 COG4Q9H9E3 785 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 ACTR5Q9H9F9 607 aaPredicted RBP14.05□□□□□ -0.16
USP39-207ENST00000450066 HEBP1Q9NRV9 189 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 MBD1Q9UIS9 605 aaPredicted RBP14.05□□□□□ -0.16
USP39-207ENST00000450066 COQ6Q9Y2Z9 468 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 COL4A2P08572 1712 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 F5P12259 2224 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 STX16-NPEPL1H3BU86 382 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 QSOX1O00391 747 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 STX16O14662 325 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 KPNA5O15131 536 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 MTX2O75431 263 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 SUPT7LO94864 414 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 EGFP01133 1207 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 CCR7P32248 378 aa14.05□□□□□ -0.16
USP39-207ENST00000450066 ALDH18A1P54886 795 aaKnown RBP14.05□□□□□ -0.16
USP39-207ENST00000450066 NAA20P61599 178 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms