RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 UBE2IP63279 158 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 GPLD1P80108 840 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 CCDC173Q0VFZ6 552 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 EIF3IQ13347 325 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 POU6F1Q14863 301 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 SEPT7Q16181 437 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 LONRF2Q1L5Z9 754 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 COL28A1Q2UY09 1125 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 FNBP1LQ5T0N5 605 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 WASH2PQ6VEQ5 465 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 DET1Q7L5Y6 550 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 AMZ2Q86W34 360 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 BEND7Q8N7W2 519 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 CCDC89Q8N998 374 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 NAT14Q8WUY8 206 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 MAIP1Q8WWC4 291 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 SH3KBP1Q96B97 665 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 CDKN2AIPNLQ96HQ2 116 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 ZCCHC2Q9C0B9 1178 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 KCNF1Q9H3M0 494 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 WASH6PQ9NQA3 447 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 RAB6BQ9NRW1 208 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 THSD1Q9NS62 852 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 NLE1Q9NVX2 485 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 ZKSCAN5Q9Y2L8 839 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 DNMT3AQ9Y6K1 912 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 PRAMEF33A0A0G2JMD5 474 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 MROH6A6NGR9 719 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 PDZK1P1A8MUH7 402 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 RRP8O43159 456 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 SGTAO43765 313 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 VCLP18206 1134 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 MPSTP25325 297 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 AKT1P31749 480 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 MC4RP32245 332 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 CSF2RBP32927 897 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 MLLT3P42568 568 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 KCNJ1P48048 391 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 LMAN1P49257 510 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 LIMK2P53671 638 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 PCBP4P57723 403 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 DMPKQ09013 629 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 SEMA5AQ13591 1074 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 SEPT6Q14141 434 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 CLCA4Q14CN2 919 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 C16orf72Q14CZ0 275 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 CCDC38Q502W7 563 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 AGAP9Q5VTM2 703 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 TMEM71Q6P5X7 295 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 LRRC69Q6ZNQ3 347 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 FAM83HQ6ZRV2 1179 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 SNX20Q7Z614 316 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 NXPE1Q8N323 547 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 DNAAF3Q8N9W5 541 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 RCBTB1Q8NDN9 531 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 ZNF248Q8NDW4 579 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 OR4D9Q8NGE8 314 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 OR10G6Q8NH81 332 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 STYXQ8WUJ0 223 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 CCDC97Q96F63 343 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 AHCYL2Q96HN2 611 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 NAF1Q96HR8 494 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 ZNF514Q96K75 400 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 CCDC74BQ96LY2 380 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 CMKLR1Q99788 373 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 TBC1D10AQ9BXI6 508 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 STN1Q9H668 368 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 TMEM9Q9P0T7 183 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 PAK5Q9P286 719 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 CRLS1Q9UJA2 301 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 RALYQ9UKM9 306 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 WDR37Q9Y2I8 494 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 JRKLQ9Y4A0 524 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 LOXL2Q9Y4K0 774 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 SLC30A1Q9Y6M5 507 aa12.52□□□□□ -0.41
PRPF40A-203ENST00000448428 PIKFYVEQ9Y2I7 2098 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 CCDC78A2IDD5 438 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 OR52A4PA6NMU1 304 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 E7EVH7 732 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 H7C0S8 307 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 VIPP01282 170 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 APRTP07741 180 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 ITGA2BP08514 1039 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 JMJD7P0C870 316 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 PRSS56P0CW18 603 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 ITIH1P19827 911 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 ITGALP20701 1170 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 PSMA3P25788 255 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 SLC5A2P31639 672 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 ETV5P41161 510 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 PPM1FP49593 454 aaPredicted RBP12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 CDH17Q12864 832 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 NFE2L1Q14494 772 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 KCTD19Q17RG1 926 aaPredicted RBP12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 GPR33Q49SQ1 333 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 ZRANB3Q5FWF4 1079 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 METRNLQ641Q3 311 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 PPP1R21Q6ZMI0 780 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 TMEM26Q6ZUK4 368 aa12.51□□□□□ -0.41
PRPF40A-203ENST00000448428 CLEC14AQ86T13 490 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms