RNA–Protein interactions for RNA: ENST00000446155.1

HMGB1P48-201, Transcript of high mobility group box 1 pseudogene 48, humanhuman

BASIC

Gene HMGB1P48, Length 598 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P48-201ENST00000446155 HOXA11P31270 313 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 CBSP35520 551 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 MXI1P50539 228 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 NUDT6P53370 316 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 ECT2LQ008S8 904 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 IL1RL1Q01638 556 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 SNAPC1Q16533 368 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 CDONQ4KMG0 1287 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 SETMARQ53H47 684 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 CCDC158Q5M9N0 1113 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 C6orf141Q5SZD1 244 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 PLEKHA7Q6IQ23 1121 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 C8orf82Q6P1X6 216 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 LCTLQ6UWM7 567 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 LINC00696Q6ZRV3 163 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 BTN2A1Q7KYR7 527 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 PALB2Q86YC2 1186 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 MCEMP1Q8IX19 187 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 SLC35F3Q8IY50 421 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 CCDC13Q8IYE1 715 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 SYCP3Q8IZU3 236 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 AADATQ8N5Z0 425 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 MIGA1Q8NAN2 632 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 ATP6V0A1Q93050 837 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 MIB2Q96AX9 1013 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 ZC3HAV1LQ96H79 300 aaKnown RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 ERO1AQ96HE7 468 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 ZNF830Q96NB3 372 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 SIN3AQ96ST3 1273 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 CDRT15Q96T59 188 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 MYCBPQ99417 103 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 FSD1Q9BTV5 496 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 SF3B5Q9BWJ5 86 aaKnown RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 ESRP2Q9H6T0 727 aaKnown RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 MAGEE1Q9HCI5 957 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 IL1RAPL2Q9NP60 686 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 AGO1Q9UL18 857 aaKnown RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 AGTPBP1Q9UPW5 1226 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 ZNF148Q9UQR1 794 aa4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 WBP11Q9Y2W2 641 aaKnown RBP4.43□□□□□ -1.7
HMGB1P48-201ENST00000446155 LRRD1A4D1F6 860 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 CPLX1O14810 134 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 OGG1O15527 345 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ASAP2O43150 1006 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 KCNAB3O43448 404 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 NDUFB4O95168 129 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 SIX3O95343 332 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 PNPP00491 289 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 IGHDP01880 384 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 HOXC6P09630 235 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 SRCP12931 536 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 TCEA1P23193 301 aaKnown RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ACADLP28330 430 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 MTHFRP42898 656 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 HTR6P50406 440 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 EVCP57679 992 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 TAS2R40P59535 323 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 NANOS2P60321 138 aaKnown RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ITGA7Q13683 1181 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 RCN2Q14257 317 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 LASP1Q14847 261 aaKnown RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ARHGEF6Q15052 776 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 KRT24Q2M2I5 525 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 TCTN1Q2MV58 587 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 USP41Q3LFD5 358 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 CBWD6Q4V339 395 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 TDRD12Q587J7 1177 aaKnown RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 CBWD3Q5JTY5 395 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 RARS2Q5T160 578 aaKnown RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 LRIF1Q5T3J3 769 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 C6orf163Q5TEZ5 329 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 TMEM198Q66K66 360 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 HIST2H2BCQ6DN03 193 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 HIST2H2BDQ6DRA6 164 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ANKRD54Q6NXT1 300 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 PPP1R21Q6ZMI0 780 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 QSOX2Q6ZRP7 698 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 MTSS1LQ765P7 747 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 LINGO2Q7L985 606 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 SPATA19Q7Z5L4 167 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 DSG4Q86SJ6 1040 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 SLC9B2Q86UD5 537 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ARID3BQ8IVW6 561 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ZCCHC9Q8N567 271 aaKnown RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 C9orf106Q8NAJ2 232 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 LILRB1Q8NHL6 650 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 CFAP61Q8NHU2 1237 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 UTP15Q8TED0 518 aaKnown RBP4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 TRIB2Q92519 343 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ERGIC1Q969X5 290 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 OTULINQ96BN8 352 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 ARSGQ96EG1 525 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 DACH2Q96NX9 599 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 SLITRK1Q96PX8 696 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 TMEM237Q96Q45 408 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 TMEM47Q9BQJ4 181 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 MMP27Q9H306 513 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 GOLPH3LQ9H4A5 285 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 THAP9Q9H5L6 903 aa4.42□□□□□ -1.7
HMGB1P48-201ENST00000446155 BPIFA1Q9NP55 256 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms