RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RAB11FIP2Q7L804 512 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ST6GALNAC4Q9H4F1 302 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 RTTNQ86VV8 2226 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 MYH13Q9UKX3 1938 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UBXN2AP68543 259 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 IRF8Q02556 426 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SPOCK1Q08629 439 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 FAAP100Q0VG06 881 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 OR52E6Q96RD3 313 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 NPAS2Q99743 824 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 LGR4Q9BXB1 951 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 IRF2BPLQ9H1B7 796 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 IL25Q9H293 177 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PPA2Q9H2U2 334 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 POMKQ9H5K3 350 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 CCDC86Q9H6F5 360 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 FARSBQ9NSD9 589 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 C19orf12Q9NSK7 152 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ARMCX1Q9P291 453 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ASCC3Q8N3C0 2202 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 A0A0G2JMP0 313 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 BAG6P46379 1132 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 OR4M2Q8NGB6 313 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 OSBPL7Q9BZF2 842 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 LYVE1Q9Y5Y7 322 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 FAM234BA2RU67 622 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 TGOLN2O43493 480 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 TCF7P36402 384 aaPredicted RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 ARMC12Q5T9G4 340 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SV2AQ7L0J3 742 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PRELID2Q8N945 189 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UXS1Q8NBZ7 420 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 FEM1CQ96JP0 617 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ITPAQ9BY32 194 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SNX8Q9Y5X2 465 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 C1orf196B1AJZ1 125 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 FBP2O00757 339 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ZNF33BQ06732 778 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 CTC1Q2NKJ3 1217 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 CBWD3Q5JTY5 395 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 CBWD5Q5RIA9 395 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 METTL2BQ6P1Q9 378 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 KCNT2Q6UVM3 1135 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 FAM49AQ9H0Q0 323 aaPredicted RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 CYTH4Q9UIA0 394 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 TLX3O43711 291 aaPredicted RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 LYPLA2O95372 231 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CYP11A1P05108 521 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 NR2F1P10589 423 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TAL1P17542 331 aaPredicted RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 TFEBP19484 476 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TAS2R31P59538 309 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 DYNLL1P63167 89 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 CYP4F2P78329 520 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 RHDQ02161 417 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CYP4F3Q08477 520 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CCNIQ14094 377 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CA9Q16790 459 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 GLT6D1Q7Z4J2 308 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 KLHL36Q8N4N3 616 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 NEUROD4Q9HD90 331 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TBC1D24Q9ULP9 559 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 NID2Q14112 1375 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 RPL10P27635 214 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 RGS7P49802 495 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CBR4Q8N4T8 237 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 KDM1BQ8NB78 822 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 OR52K2Q8NGK3 314 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 SPATA22Q8NHS9 363 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 NCSTNQ92542 709 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 PARK7Q99497 189 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 SPOCK3Q9BQ16 436 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 RAB11FIP5Q9BXF6 653 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TM9SF3Q9HD45 589 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 SEC14L3Q9UDX4 400 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 JCHAINP01591 159 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TYMPP19971 482 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 MAGEA12P43365 314 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 FITM2Q8N6M3 262 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 PACSIN3Q9UKS6 424 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 A0A0J9YYE9 177 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 PRKAB2O43741 272 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 IFNA17P01571 189 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 RHOCP08134 193 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 RPS17P08708 135 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 LPOP22079 712 aaPredicted RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 SPIBQ01892 262 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TIGD6Q17RP2 521 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 RNASEH2BQ5TBB1 312 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 ADGRF2Q8IZF7 708 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 KCTD4Q8WVF5 259 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 FAM151AQ8WW52 585 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 GEMIN6Q8WXD5 167 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 MOAP1Q96BY2 351 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 S100A16Q96FQ6 103 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 L7N2F9 121 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 SLC16A2P36021 539 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 YBEYP58557 167 aaPredicted RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 WSCD2Q2TBF2 565 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 ZNF772Q68DY9 489 aaPredicted RBP7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms