RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TMCO1Q9UM00 188 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 PCDHB9Q9Y5E1 797 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 DOCK1Q14185 1865 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 ASPDHA6ND91 283 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 GABRDO14764 452 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 CYBBP04839 570 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 CDK9P50750 372 aaKnown RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 RENBPP51606 427 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 SGSHP51688 502 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 KPNA2P52292 529 aaKnown RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 POLR2JP52435 117 aaKnown RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 FAM174BQ3ZCQ3 159 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 PAGE2BQ5JRK9 111 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 RGMBQ6NW40 437 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 EBPLQ9BY08 206 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 LHPPQ9H008 270 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 CRISPLD1Q9H336 500 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 GIMAP4Q9NUV9 329 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 POLR3BQ9NW08 1133 aaPredicted RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 PKD2L2Q9NZM6 624 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 ZNF225Q9UK10 706 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 CDH9Q9ULB4 789 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 FCF1Q9Y324 198 aaKnown RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 CEP290O15078 2479 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 SMIM35A0A1B0GVV1 85 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 TRIM43BA6NCK2 446 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 LDB2O43679 373 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 NPHS1O60500 1241 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 SLC22A3O75751 556 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 F2P00734 622 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 FUCA1P04066 466 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 HMOX2P30519 316 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 MC4RP32245 332 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 VBP1P61758 197 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 XIAPP98170 497 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 TP53BP2Q13625 1128 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 ARHGEF7Q14155 803 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 ACAP2Q15057 778 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 UPP1Q16831 310 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 KIAA0930Q6ICG6 404 aaPredicted RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 LETMD1Q6P1Q0 360 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 KDELC1Q6UW63 502 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 DTWD1Q8N5C7 304 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 RPL3LQ92901 407 aaKnown RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 NTAN1Q96AB6 310 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 CDKN2AIPNLQ96HQ2 116 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 GLT1D1Q96MS3 346 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 TOR3AQ9H497 397 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 CD300AQ9UGN4 299 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 DAPK2Q9UIK4 370 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 RABL2BQ9UNT1 228 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 WDR87Q6ZQQ6 2873 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 SYCE1LA8MT33 242 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 AP3B1O00203 1094 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 TNPO2O14787 897 aaKnown RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 PRKD3O94806 890 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 CST1P01037 141 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 KCNE1P15382 129 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 TNFRSF1BP20333 461 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 DNAJB2P25686 324 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 CA5AP35218 305 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ADRA1AP35348 466 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 CRYBB1P53674 252 aaPredicted RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 SYT16Q17RD7 645 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 PM20D1Q6GTS8 502 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 THEM5Q8N1Q8 247 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 C10orf111Q8N326 155 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ZC3H15Q8WU90 426 aaKnown RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 FOXJ1Q92949 421 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 PPP1R14BQ96C90 147 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 ABHD8Q96I13 439 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 IL12RB2Q99665 862 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 COQ7Q99807 217 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SLC6A13Q9NSD5 602 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SMPD3Q9NY59 655 aaPredicted RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP40-203ENST00000427112 TBC1D30Q9Y2I9 924 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 PKP3Q9Y446 797 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 TCRBV3S1A0A5B6 114 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SMIM30A4D0T7 59 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 RFXAPO00287 272 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 SEC22BO75396 215 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 GJB5O95377 273 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 FADS2O95864 444 aaKnown RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 BCL10O95999 233 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 GLUD1P00367 558 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 MMP2P08253 660 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 CLCN5P51795 746 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 HK3P52790 923 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 MLLT6P55198 1093 aaPredicted RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 MRPS6P82932 125 aaKnown RBP8.55□□□□□ -1.04
USP40-203ENST00000427112 ABRAXAS2Q15018 415 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 CTXN3Q4LDR2 81 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 MRNIPQ6NTE8 343 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 TXNDC11Q6PKC3 985 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 GPR180Q86V85 440 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 GPSM1Q86YR5 675 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 KCTD13Q8WZ19 329 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 TSPAN17Q96FV3 270 aa8.55□□□□□ -1.04
USP40-203ENST00000427112 FAM193BQ96PV7 902 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms