RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RBM4BQ9BQ04 359 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 RBM4Q9BWF3 364 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 GMEB2Q9UKD1 530 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CORO1CQ9ULV4 474 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PITPNM1O00562 1244 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C9P02748 559 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF3P17036 446 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SSTR1P30872 391 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 RHBDL3P58872 404 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CNTN2Q02246 1040 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ST3GAL4Q11206 333 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SLC25A52Q3SY17 297 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 INTS5Q6P9B9 1019 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 UNC5AQ6ZN44 842 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C12orf56Q8IXR9 622 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 WFIKKN2Q8TEU8 576 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TRAPPC12Q8WVT3 735 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF184Q99676 751 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 WRAP53Q9BUR4 548 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 NELFAQ9H3P2 528 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 WBP11Q9Y2W2 641 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF521Q96K83 1311 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 IST1P53990 364 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CDKL1Q00532 357 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 GKN2Q86XP6 184 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZBTB2Q8N680 514 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TRPM4Q8TD43 1214 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TBATAQ96M53 351 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ACAT2Q9BWD1 397 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TTYH1Q9H313 450 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TIGARQ9NQ88 270 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 THUMPD1Q9NXG2 353 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 RUVBL1Q9Y265 456 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 MAN2B2Q9Y2E5 1009 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 OR1F1O43749 312 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TULP3O75386 442 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 OR3A3P47888 321 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 OR3A2P47893 321 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SEC24CP53992 1094 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SP140Q13342 867 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 OCLNQ16625 522 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 AAGABQ6PD74 315 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 RAD9BQ6WBX8 426 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 MAP4K3Q8IVH8 894 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ATAD1Q8NBU5 361 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 INO80EQ8NBZ0 244 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PDPRQ8NCN5 879 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C15orf40Q8WUR7 153 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 HDAC10Q969S8 669 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZBED6CLQ96FA7 236 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF514Q96K75 400 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 EXOC2Q96KP1 924 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 OSBPL11Q9BXB4 747 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SEMA6AQ9H2E6 1030 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CXorf56Q9H5V9 222 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CCDC86Q9H6F5 360 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 LRTM1Q9HBL6 345 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TRMT13Q9NUP7 481 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ADGRE2Q9UHX3 823 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PADI2Q9Y2J8 665 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TRAPPC6AO75865 159 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 IRF2P14316 349 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 IL7RP16871 459 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 DHPSP49366 369 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PGDP52209 483 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TMBIM6P55061 237 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 MRPS5P82675 430 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 FPGSQ05932 587 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CDK18Q07002 472 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C1orf189Q5VU69 101 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CXorf57Q6NSI4 855 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 OTOP3Q7RTS5 596 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 DEFB132Q7Z7B7 95 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SLC22A15Q8IZD6 547 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SLC34A3Q8N130 599 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ANKHQ9HCJ1 492 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SIRPGQ9P1W8 387 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 RAP2CQ9Y3L5 183 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 DHRS12A0PJE2 317 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 AZIN1O14977 448 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PEX11AO75192 247 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 RPP40O75818 363 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SLITRK3O94933 977 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 FSBPO95073 299 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CYP1A2P05177 515 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ITGA2BP08514 1039 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PKMP14618 531 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 GJA1P17302 382 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CTSKP43235 329 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 DGKEP52429 567 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PRAMEF19Q5SWL8 479 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C9orf57Q5W0N0 161 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C10orf107Q8IVU9 208 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 OR2L8Q8NGY9 312 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 AKT1S1Q96B36 256 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM68Q96MH6 324 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 FAM124BQ9H5Z6 455 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PNO1Q9NRX1 252 aaKnown RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 VWDEQ8N2E2 1590 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms