RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 LRRC70Q7Z2Q7 622 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 SIDT2Q8NBJ9 832 aaKnown RBP8.29□□□□□ -1.08
USP54-203ENST00000418501 JADE3Q92613 823 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 TUBGCP3Q96CW5 907 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 RMDN2Q96LZ7 410 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 EFHD1Q9BUP0 239 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 EPHX3Q9H6B9 360 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 IL26Q9NPH9 171 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 SNX6Q9UNH7 406 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 ANGPT2O15123 496 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 IDO1P14902 403 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 AOC1P19801 751 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 CDKN2DP55273 166 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 NCALDP61601 193 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 ZNF33BQ06732 778 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 RIPK1Q13546 671 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 PEX6Q13608 980 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 CUL3Q13618 768 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 TRMT5Q32P41 509 aaKnown RBP8.29□□□□□ -1.08
USP54-203ENST00000418501 PSAPL1Q6NUJ1 521 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 KBTBD6Q86V97 674 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 SKA1Q96BD8 255 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 VPS35Q96QK1 796 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 CCM2Q9BSQ5 444 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 RTKNQ9BST9 563 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 MCMBPQ9BTE3 642 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 HDAC8Q9BY41 377 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 C1orf21Q9H246 121 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 MRPS17Q9Y2R5 130 aaKnown RBP8.29□□□□□ -1.08
USP54-203ENST00000418501 YBX2Q9Y2T7 364 aaKnown RBP8.29□□□□□ -1.08
USP54-203ENST00000418501 DYRK1BQ9Y463 629 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 OARD1Q9Y530 152 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 TRBV5-4A0A0C4DH59 114 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 PSMD8P48556 350 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 KCNK10P57789 538 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 SEMA3AQ14563 771 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 ATP6AP1LQ52LC2 224 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 GPRC6AQ5T6X5 926 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 ISCA2Q86U28 154 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 MYLK4Q86YV6 388 aaPredicted RBP8.29□□□□□ -1.08
USP54-203ENST00000418501 CPNE9Q8IYJ1 553 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 AGR3Q8TD06 166 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 SLC29A3Q9BZD2 475 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 VCXQ9H320 206 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 ZNF358Q9NW07 568 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 THAP10Q9P2Z0 257 aaPredicted RBP8.29□□□□□ -1.08
USP54-203ENST00000418501 CD207Q9UJ71 328 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 PRPF19Q9UMS4 504 aaKnown RBP8.29□□□□□ -1.08
USP54-203ENST00000418501 ACTL7AQ9Y615 435 aa8.29□□□□□ -1.08
USP54-203ENST00000418501 DNMT3AQ9Y6K1 912 aaPredicted RBP8.29□□□□□ -1.08
USP54-203ENST00000418501 MYO18AQ92614 2054 aaKnown RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 C15orf38-AP3S2A0A0A6YYH1 394 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 NIPSNAP2O75323 286 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 TM7SF2O76062 418 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 DRD1P21728 446 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 MPSTP25325 297 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 CTSOP43234 321 aaPredicted RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 CDKL1Q00532 357 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 BOP1Q14137 746 aaKnown RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 KRT33BQ14525 404 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 ZNF460Q14592 562 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 TSNQ15631 228 aaKnown RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 UBE2R2Q712K3 238 aaPredicted RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 ARPINQ7Z6K5 226 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 MIER2Q8N344 545 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 ZNF781Q8N8C0 355 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 KYQ8NBH2 561 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 METTL6Q8TCB7 284 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 ANKRD27Q96NW4 1050 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 CENPKQ9BS16 269 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 NUF2Q9BZD4 464 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 STOML1Q9UBI4 398 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 NPIPB15A6NHN6 443 aaPredicted RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 STK16O75716 305 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 PAPLNO95428 1278 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 CD160O95971 181 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 FGF4P08620 206 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 GLULP15104 373 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 FCHO2Q0JRZ9 810 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 GRIK2Q13002 908 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 PAGE2BQ5JRK9 111 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 BTN2A2Q8WVV5 523 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 GLYATL1Q969I3 302 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 ACTR8Q9H981 624 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 PARVBQ9HBI1 364 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 NDUFAF1Q9Y375 327 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 E9PBE3 544 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 FFAR2O15552 330 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 CCNT2O60583 730 aaKnown RBP8.28□□□□□ -1.08
USP54-203ENST00000418501 KLHL41O60662 606 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 CISD3P0C7P0 127 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 LAMP2P13473 410 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 HGFP14210 728 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 TIMP2P16035 220 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 XIAPP98170 497 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 ADAM15Q13444 863 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 SMU1Q2TAY7 513 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 TMEM52BQ4KMG9 183 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 KIAA1161Q6NSJ0 714 aa8.28□□□□□ -1.08
USP54-203ENST00000418501 RALGPS2Q86X27 583 aaPredicted RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms