RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ANKRD40Q6AI12 368 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TADA2BQ86TJ2 420 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 CREBRFQ8IUR6 639 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 MFSD6LQ8IWD5 586 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 HMGB4Q8WW32 186 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 LINC00476Q8WZB0 136 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TRIM63Q969Q1 353 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 RSPRY1Q96DX4 576 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 FAM122AQ96E09 287 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TCEAL4Q96EI5 215 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 PCED1BQ96HM7 432 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 PDLIM2Q96JY6 352 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 FAM81BQ96LP2 452 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 ZNF747Q9BV97 191 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 NACA2Q9H009 215 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 FBXO44Q9H4M3 255 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TRPC7Q9HCX4 862 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 DMAP1Q9NPF5 467 aaPredicted RBP6.52□□□□□ -1.37
USP40-202ENST00000409945 COMMD8Q9NX08 183 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 NKX1-2Q9UD57 310 aaPredicted RBP6.52□□□□□ -1.37
USP40-202ENST00000409945 RAB21Q9UL25 225 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 GXYLT2A0PJZ3 443 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 HEPACAM2A8MVW5 462 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 C1QTNF3-AMACRE9PGA6 284 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 CHADO15335 359 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 NOL4O94818 638 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 FAM200BP0CF97 657 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 GLULP15104 373 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 CREB1P16220 341 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 AVPR2P30518 371 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 GDI1P31150 447 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 NDST1P52848 882 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 GPC5P78333 572 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 GOLGA8FQ08AF8 430 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 GOLGA8DPQ0D2H9 430 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 CSHL1Q14406 222 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 MLF2Q15773 248 aaPredicted RBP6.52□□□□□ -1.37
USP40-202ENST00000409945 SPATS1Q496A3 300 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 ALFQ53S48 1182 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 CCDC144NLQ6NUI1 221 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 ZNF852Q6ZMS4 543 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TRABD2AQ86V40 505 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TMC8Q8IU68 726 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 P3H2Q8IVL5 708 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 ARID3BQ8IVW6 561 aaPredicted RBP6.52□□□□□ -1.37
USP40-202ENST00000409945 CMTM8Q8IZV2 173 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 NUP93Q8N1F7 819 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 MAB21L3Q8N8X9 362 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TAS1R2Q8TE23 839 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 CLEC4CQ8WTT0 213 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 OVCA2Q8WZ82 227 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 COG8Q96MW5 612 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 ALG8Q9BVK2 526 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TWSG1Q9GZX9 223 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 SMYD3Q9H7B4 428 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 C8orf33Q9H7E9 229 aaPredicted RBP6.52□□□□□ -1.37
USP40-202ENST00000409945 TRPV5Q9NQA5 729 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 RWDD2AQ9UIY3 292 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 DOCK8Q8NF50 2099 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 KANSL1LA0AUZ9 987 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 TRIM49BA6NDI0 452 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 AGAP5A6NIR3 686 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 F8VP50 259 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CES2O00748 559 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 ATP2C2O75185 946 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 VNN2O95498 520 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 GJA1P17302 382 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CD58P19256 250 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 AOC1P19801 751 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 YWHAQP27348 245 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 THBS4P35443 961 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CCR2P41597 374 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CDH8P55286 799 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 LMAN2Q12907 356 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 LY6G5CQ5SRR4 150 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 ACOT1Q86TX2 421 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 MON1AQ86VX9 555 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CRYBG2Q8N1P7 616 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 ANKRD20A12PQ8NF67 263 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CCDC26Q8TAB7 109 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 FBXO32Q969P5 355 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 EEF2KMTQ96G04 330 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CLSTN2Q9H4D0 955 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CCDC134Q9H6E4 229 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 TBC1D17Q9HA65 648 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 ZNF334Q9HCZ1 680 aaPredicted RBP6.51□□□□□ -1.37
USP40-202ENST00000409945 TMLHEQ9NVH6 421 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 KIAA1257Q9ULG3 409 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 CRYL1Q9Y2S2 319 aa6.51□□□□□ -1.37
USP40-202ENST00000409945 E7EVH7 732 aa6.5□□□□□ -1.37
USP40-202ENST00000409945 STX16-NPEPL1H3BU86 382 aa6.5□□□□□ -1.37
USP40-202ENST00000409945 STX16O14662 325 aa6.5□□□□□ -1.37
USP40-202ENST00000409945 SLC9A3R1O14745 358 aaPredicted RBP6.5□□□□□ -1.37
USP40-202ENST00000409945 SUV39H1O43463 412 aa6.5□□□□□ -1.37
USP40-202ENST00000409945 KAT7O95251 611 aa6.5□□□□□ -1.37
USP40-202ENST00000409945 PEX11BO96011 259 aa6.5□□□□□ -1.37
USP40-202ENST00000409945 AFPP02771 609 aaKnown RBP6.5□□□□□ -1.37
USP40-202ENST00000409945 MTIF2P46199 727 aaKnown RBP6.5□□□□□ -1.37
USP40-202ENST00000409945 IFNAR2P48551 515 aa6.5□□□□□ -1.37
USP40-202ENST00000409945 FMO5P49326 533 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms