RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ARSAP15289 507 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PON1P27169 355 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 AVPR2P30518 371 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 FMO4P31512 558 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CCKBRP32239 447 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SOX9P48436 509 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 FNTAP49354 379 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PDX1P52945 283 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 VSNL1P62760 191 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PRMT9Q6P2P2 845 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SNX32Q86XE0 403 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 IZUMO1Q8IYV9 350 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ZNF398Q8TD17 642 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 NUAK2Q9H093 628 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TMEM168Q9H0V1 697 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 GIN1Q9NXP7 522 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SCML2Q9UQR0 700 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TPRKBQ9Y3C4 175 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 AFDNP55196 1824 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 MAGEB16A2A368 324 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 FAM20BO75063 409 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 AKAP3O75969 853 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CYP1A1P04798 512 aaPredicted RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ATP1A3P13637 1013 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 GLULP15104 373 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ME2P23368 584 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 EDNRBP24530 442 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 HNF4AP41235 474 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TTPAP49638 278 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 RPS6KA3P51812 740 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DLG4P78352 724 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 MRPS22P82650 360 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DSC1Q08554 894 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PUM1Q14671 1186 aaKnown RBP eCLIP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 C3orf38Q5JPI3 329 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 FAM78AQ5JUQ0 283 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ZBTB49Q6ZSB9 765 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SLC9A9Q8IVB4 645 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DEPDC4Q8N2C3 294 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 OR7D4Q8NG98 312 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PLEKHG4BQ96PX9 1271 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 NDNQ99608 321 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SUV39H2Q9H5I1 410 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PCDH9Q9HC56 1237 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 HCFC1R1Q9NWW0 138 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 B4GALT7Q9UBV7 327 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TLR6Q9Y2C9 796 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 YBX2Q9Y2T7 364 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SNX13Q9Y5W8 968 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 LIN7AO14910 233 aaPredicted RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 POLR1CO15160 346 aaPredicted RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 STX11O75558 287 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 CCNKO75909 580 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 FDPSP14324 419 aaKnown RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 KCNK10P57789 538 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 AUHQ13825 339 aaKnown RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 PERM1Q5SV97 790 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 RBM43Q6ZSC3 357 aaKnown RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 TAS1R3Q7RTX0 852 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 CCNJLQ8IV13 435 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 SH2D3CQ8N5H7 860 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 LSM14AQ8ND56 463 aaKnown RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 ZHX1-C8orf76Q96EF9 292 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 PNPLA8Q9NP80 782 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 KLHL28Q9NXS3 571 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 CDC14CA4D256 554 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 SFTPCP11686 197 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 TYRP1P17643 537 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 HNRNPA2B1P22626 353 aaKnown RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 PIK3CGP48736 1102 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 MNX1P50219 401 aaPredicted RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 CHRNB3Q05901 458 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 GALNT3Q14435 633 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 LRRTM4Q86VH4 590 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 HGH1Q9BTY7 390 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 ROPN1BQ9BZX4 212 aaPredicted RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 METTL8Q9H825 291 aaKnown RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 ROPN1Q9HAT0 212 aaPredicted RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 ANKHQ9HCJ1 492 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 LTB4R2Q9NPC1 389 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 PHF11Q9UIL8 331 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 SNX8Q9Y5X2 465 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 ZNF780BQ9Y6R6 833 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 A0A1W2PQC6 194 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 LCHNA4D1U4 455 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 PLOD2O00469 737 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 GLDCP23378 1020 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 PPP2R1BP30154 601 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 FEN1P39748 380 aaKnown RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 FOLR3P41439 243 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 IL2P60568 153 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 ZXDAP98168 799 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 CDK18Q07002 472 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 BNIP1Q12981 228 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 PITRM1Q5JRX3 1037 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 LHX8Q68G74 356 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 SCARA3Q6AZY7 606 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 TANGO2Q6ICL3 276 aa7.23□□□□□ -1.25
SCN9A-202ENST00000409435 CIR1Q86X95 450 aaPredicted RBP7.23□□□□□ -1.25
SCN9A-202ENST00000409435 TREML1Q86YW5 311 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms