RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 RLN1P04808 185 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 KRT8P05787 483 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 HEXAP06865 529 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 AREGP15514 252 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 FOLR3P41439 243 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 FRKP42685 505 aaPredicted RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 KRT6CP48668 564 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 BLKP51451 505 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 CLCN3P51790 818 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 DGKQP52824 942 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 B4GALNT1Q00973 533 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 ZBTB17Q13105 803 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 COL28A1Q2UY09 1125 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 CFAP221Q4G0U5 840 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM211Q6ICI0 200 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 ACSM6Q6P461 480 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 NOTUMQ6P988 496 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 SEPT14Q6ZU15 432 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF551Q7Z340 670 aaPredicted RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 ADIPOR2Q86V24 386 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 WDR5BQ86VZ2 330 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 RFX6Q8HWS3 928 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 DDIASQ8IXT1 998 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 SCYL3Q8IZE3 742 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 LRRC43Q8N309 656 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 ZCCHC7Q8N3Z6 543 aaKnown RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 OR52K1Q8NGK4 314 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 ROBO4Q8WZ75 1007 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 SMG7Q92540 1137 aaKnown RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 EXT2Q93063 718 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 SLAMF9Q96A28 289 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 MARS2Q96GW9 593 aaKnown RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 WDYHV1Q96HA8 205 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 FAM81BQ96LP2 452 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 WNT5BQ9H1J7 359 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 MMP27Q9H306 513 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 FZD8Q9H461 694 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 NOL11Q9H8H0 719 aaKnown RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 AKIRIN1Q9H9L7 192 aaPredicted RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 PIH1D3Q9NQM4 214 aaKnown RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 TCP11L1Q9NUJ3 509 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 FAM118AQ9NWS6 357 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 BABAM1Q9NWV8 329 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 SPG21Q9NZD8 308 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 DDX25Q9UHL0 483 aaKnown RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 GRID1Q9ULK0 1009 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 SLC8A2Q9UPR5 921 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 PLEKHA6Q9Y2H5 1048 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 BAZ1AQ9NRL2 1556 aaPredicted RBP4.09□□□□□ -1.76
HMGB1-204ENST00000399489 DHX29Q7Z478 1369 aaKnown RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 TTC41PQ6P2S7 1318 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 TRBV2A0A0J9YWF9 115 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 E2F3O00716 465 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 CCNT1O60563 726 aaKnown RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 NME6O75414 186 aaPredicted RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 MTX2O75431 263 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 ENO1P06733 434 aaKnown RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 IL7RP16871 459 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 ITGALP20701 1170 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 DNAJB1P25685 340 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 PTPN9P43378 593 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 GABRB2P47870 512 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 ARSFP54793 590 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 CDH13P55290 713 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 UBE2HP62256 183 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 GAD2Q05329 585 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 RBPJQ06330 500 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 ACSM1Q08AH1 577 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 DDX39BQ13838 428 aaKnown RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 IDI1Q13907 227 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 E2F2Q14209 437 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 DLG2Q15700 870 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 ST3GAL2Q16842 350 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 EPC2Q52LR7 807 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 IFI44LQ53G44 452 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 BRAT1Q6PJG6 821 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 C11orf57Q6ZUT1 292 aaPredicted RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 TOM1L2Q6ZVM7 507 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 KRTAP5-2Q701N4 177 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 MOB3CQ70IA8 216 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 PTF1AQ7RTS3 328 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 RNF144BQ7Z419 303 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 SIAH3Q8IW03 269 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 PDCL2Q8N4E4 241 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 OR8K5Q8NH50 307 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 C9orf43Q8TAL5 461 aaPredicted RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 FAM110DQ8TAY7 271 aaPredicted RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 ST6GALNAC6Q969X2 333 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 NACC2Q96BF6 587 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 SGF29Q96ES7 293 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 DTD2Q96FN9 168 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 CCDC77Q9BR77 488 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 KATNB1Q9BVA0 655 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 SLC29A3Q9BZD2 475 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 RTN4RQ9BZR6 473 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 POLR1EQ9GZS1 481 aaKnown RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 RAB33BQ9H082 229 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 KLK15Q9H2R5 256 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 CLSTN2Q9H4D0 955 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms