RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CD82P27701 267 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 EPHA4P54764 986 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 TMEM115Q12893 351 aaPredicted RBP13.21□□□□□ -0.29
VCX3A-202ENST00000398729 ITGA9Q13797 1035 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 CHRNA6Q15825 494 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 KHDC1Q4VXA5 237 aaKnown RBP13.21□□□□□ -0.29
VCX3A-202ENST00000398729 ANKRD20A2Q5SQ80 823 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 LDLRAP1Q5SW96 308 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 ANKRD20A1Q5TYW2 823 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 ANKRD20A3Q5VUR7 823 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 WDR74Q6RFH5 385 aaPredicted RBP13.21□□□□□ -0.29
VCX3A-202ENST00000398729 TRAPPC5Q8IUR0 188 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 TMEM139Q8IV31 216 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 ZNF547Q8IVP9 402 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 UBL4BQ8N7F7 174 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 PPP1R2P1Q96PQ5 205 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 TAAR9Q96RI9 348 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 FAM118BQ9BPY3 351 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 ZCCHC2Q9C0B9 1178 aaKnown RBP13.21□□□□□ -0.29
VCX3A-202ENST00000398729 EPB41L1Q9H4G0 881 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 TMEM9Q9P0T7 183 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 SLC23A2Q9UGH3 650 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 TMPRSS11EQ9UL52 423 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 DNAJC16Q9Y2G8 782 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 PCDHB11Q9Y5F2 797 aa13.21□□□□□ -0.29
VCX3A-202ENST00000398729 UTP20O75691 2785 aaKnown RBP13.21□□□□□ -0.29
VCX3A-202ENST00000398729 NOTCH2Q04721 2471 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 USP9YO00507 2555 aaPredicted RBP13.2□□□□□ -0.3
VCX3A-202ENST00000398729 PDZK1P1A8MUH7 402 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 GOLGA6L6A8MZA4 724 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 MIF4GDA9UHW6 222 aaKnown RBP13.2□□□□□ -0.3
VCX3A-202ENST00000398729 STX7O15400 261 aaKnown RBP13.2□□□□□ -0.3
VCX3A-202ENST00000398729 BUD23O43709 281 aaKnown RBP13.2□□□□□ -0.3
VCX3A-202ENST00000398729 AGTP01019 485 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 VIPP01282 170 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 FGF3P11487 239 aaPredicted RBP13.2□□□□□ -0.3
VCX3A-202ENST00000398729 ITGB6P18564 788 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 PSMB4P28070 264 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 CDC25BP30305 580 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 MAPK9P45984 424 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 NFATC3Q12968 1075 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 TGIF1Q15583 401 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 AADACL2Q6P093 401 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 FAM151BQ6UXP7 276 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 RANBP10Q6VN20 620 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 PRICKLE2Q7Z3G6 844 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 TRIM48Q8IWZ4 208 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 TTC13Q8NBP0 860 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 SPC24Q8NBT2 197 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 CCDC110Q8TBZ0 833 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 NCSTNQ92542 709 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 LRRC45Q96CN5 670 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 SPATA13Q96N96 652 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 GORASP1Q9BQQ3 440 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 TRIM4Q9C037 500 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 FOXJ2Q9P0K8 574 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 PDP2Q9P2J9 529 aa13.2□□□□□ -0.3
VCX3A-202ENST00000398729 C5orf60A6NFR6 353 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 LILRA5A6NI73 299 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 C2orf81A6NN90 581 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 TERTO14746 1132 aaKnown RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UGT1A9O60656 530 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 KCNJ13O60928 360 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 XRCC1P18887 633 aaPredicted RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UGT1A6P19224 532 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 LPOP22079 712 aaPredicted RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 IDSP22304 550 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UGT1A1P22309 533 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UGT1A4P22310 534 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 ADRA1AP35348 466 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UGT1A3P35503 534 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UBE2IP63279 158 aaKnown RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 NFKB2Q00653 900 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 SRSF6Q13247 344 aaKnown RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 TAF1AQ15573 450 aaPredicted RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 SEPT7Q16181 437 aaKnown RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 COLEC12Q5KU26 742 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 SNAP47Q5SQN1 464 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 ABRAXAS1Q6UWZ7 409 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 WASH2PQ6VEQ5 465 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 ZFAND4Q86XD8 727 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 FAM129CQ86XR2 697 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 DDHD1Q8NEL9 900 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 ART4Q93070 314 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 DESI2Q9BSY9 194 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 TBC1D10AQ9BXI6 508 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UCK1Q9HA47 277 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UGT1A7Q9HAW7 530 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UGT1A10Q9HAW8 530 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 UGT1A8Q9HAW9 530 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 WASH6PQ9NQA3 447 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 STARD5Q9NSY2 213 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 SLC39A1Q9NY26 324 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 SCHIP1Q9P0W5 487 aaPredicted RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 ZNF624Q9P2J8 865 aaPredicted RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 TRIM10Q9UDY6 481 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 PACSIN2Q9UNF0 486 aaPredicted RBP13.19□□□□□ -0.3
VCX3A-202ENST00000398729 PCDHGA3Q9Y5H0 932 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 ARL5AQ9Y689 179 aa13.19□□□□□ -0.3
VCX3A-202ENST00000398729 SPTAN1Q13813 2472 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms