RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 TMEM164Q5U3C3 297 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 SUN3Q8TAQ9 357 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 TXNRD2Q9NNW7 524 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 ZDHHC4Q9NPG8 344 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 TRAFD1O14545 582 aaPredicted RBP11.25□□□□□ -0.61
TTC28-201ENST00000397906 B3GALT2O43825 422 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 MPSTP25325 297 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 OMPP47874 163 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 OR52J3Q8NH60 311 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 RNF31Q96EP0 1072 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 RHOJQ9H4E5 214 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 COPG2Q9UBF2 871 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 EFR3BQ9Y2G0 817 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 MATN3O15232 486 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 TNFAIP8O95379 198 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 KCNJ5P48544 419 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 CHIT1Q13231 466 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 GRB14Q14449 540 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 SMU1Q2TAY7 513 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 SLC30A6Q6NXT4 461 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 Q96MT0 163 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 FBXL12Q9NXK8 326 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 IFNGP01579 166 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 TFAP2BQ92481 460 aa11.25□□□□□ -0.61
TTC28-201ENST00000397906 SMIM11AP58511 58 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 SGCBQ16585 318 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 MBLAC2Q68D91 279 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 ESAMQ96AP7 390 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 TMEM138Q9NPI0 162 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 ARHGAP1Q07960 439 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 PLD5Q8N7P1 536 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 LMX1AQ8TE12 382 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 MPP4Q96JB8 637 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 DDX3YO15523 660 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 C1QTNF8P60827 252 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 ZNF280BQ86YH2 543 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 TCAIMQ8N3R3 496 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 NUAK2Q9H093 628 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 LAMP2P13473 410 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 DAOAP59103 153 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 TOP3AQ13472 1001 aaPredicted RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 MED22Q15528 200 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 FAM182AQ5T1J6 154 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 GALNT7Q86SF2 657 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 AMZ2Q86W34 360 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 ATCAYQ86WG3 371 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 CELF5Q8N6W0 485 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 TSEN15Q8WW01 171 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 NEK5Q6P3R8 708 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 AMIGO2Q86SJ2 522 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 SETD6Q8TBK2 473 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 G3V2T6 193 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 CHRNGP07510 517 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 SMARCD3Q6STE5 483 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 TWIST2Q8WVJ9 160 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 MFSD3Q96ES6 412 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 QKIQ96PU8 341 aaKnown RBP eCLIP11.24□□□□□ -0.618e-7■■■■□ 20.8
TTC28-201ENST00000397906 FZD10Q9ULW2 581 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 BCL9LQ86UU0 1499 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 IGLV3-22A0A075B6J6 115 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 NDST2P52849 883 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 PDGFRLQ15198 375 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 C12orf56Q8IXR9 622 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 RTL3Q8N8U3 475 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 AZIN2Q96A70 460 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 WDR55Q9H6Y2 383 aaPredicted RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 HEBP2Q9Y5Z4 205 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 HLA-EP13747 358 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 POLR2JP52435 117 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 RGS8P57771 180 aaPredicted RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 MZT2AQ6P582 158 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 C2orf15Q8WU43 125 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 FBXW11Q9UKB1 542 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 ITGADQ13349 1161 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 ULK2Q8IYT8 1036 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 MMADHCQ9H3L0 296 aaPredicted RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 R3HDM2Q9Y2K5 976 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 TCAF1Q9Y4C2 921 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 ZBTB11O95625 1053 aaPredicted RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 YAP1P46937 504 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 COL9A3Q14050 684 aaPredicted RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 SOWAHAQ2M3V2 549 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 CARD16Q5EG05 197 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.24□□□□□ -0.61
TTC28-201ENST00000397906 DHDDSQ86SQ9 333 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 ZNF598Q86UK7 904 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 PPM1MQ96MI6 270 aa11.24□□□□□ -0.61
TTC28-201ENST00000397906 MTERF1Q99551 399 aaKnown RBP11.24□□□□□ -0.61
TTC28-201ENST00000397906 SNPHO15079 494 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 TNFP01375 233 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 F7P08709 466 aaPredicted RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 MYL9P24844 172 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 PUS10Q3MIT2 529 aaKnown RBP11.23□□□□□ -0.61
TTC28-201ENST00000397906 Q6ZVU0 165 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 SNX20Q7Z614 316 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 OAFQ86UD1 273 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 POF1BQ8WVV4 589 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 ARMC5Q96C12 935 aa11.23□□□□□ -0.61
TTC28-201ENST00000397906 PLEKHA1Q9HB21 404 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms