RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ACSL4O60488 711 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CLDN11O75508 207 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 FABP3P05413 133 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC35G4P0C7Q5 338 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 HNF4AP41235 474 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 YBEYP58557 167 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 ADGRE1Q14246 886 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 PIK3R6Q5UE93 754 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CAPN13Q6MZZ7 669 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CYP4V2Q6ZWL3 525 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CXorf40BQ96DE9 158 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 FAM84AQ96KN4 292 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 ZNF558Q96NG5 402 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 SEMA3GQ9NS98 782 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 DNAJB4Q9UDY4 337 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 TCAF1Q9Y4C2 921 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 ZNF451Q9Y4E5 1061 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 IDH3AP50213 366 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CREMQ03060 361 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 GPR158Q5T848 1215 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 IL23RQ5VWK5 629 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CERS5Q8N5B7 392 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 OR4K2Q8NGD2 314 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 GPATCH1Q9BRR8 931 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 AARSD1Q9BTE6 412 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 INTS7Q9NVH2 962 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 HPF1Q9NWY4 346 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 POMPQ9Y244 141 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 PEX16Q9Y5Y5 336 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 ZNF780BQ9Y6R6 833 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 MPZL2O60487 215 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 STK16O75716 305 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 UROSP10746 265 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 OGNP20774 298 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 MAPK12P53778 367 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 RPP38P78345 283 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 PLA2G4EQ3MJ16 856 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 ANKS1BQ7Z6G8 1248 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CACUL1Q86Y37 369 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 RBM12BQ8IXT5 1001 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 GPC2Q8N158 579 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 KBTBD7Q8WVZ9 684 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 AGAP2Q99490 1192 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 FTHL17Q9BXU8 183 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 GLIS2Q9BZE0 524 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 TAS2R1Q9NYW7 299 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 ASF1AQ9Y294 204 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 DGKBQ9Y6T7 804 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 NEURL4Q96JN8 1562 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 AGRPO00253 132 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 MAGEA8P43361 318 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CLCQ05315 142 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 COL9A3Q14050 684 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 TATDN1Q6P1N9 297 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 RHBDF2Q6PJF5 856 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 OTOP3Q7RTS5 596 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CERKQ8TCT0 537 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 CSGALNACT1Q8TDX6 532 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 AKAP1Q92667 903 aaKnown RBP eCLIP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 RSPH9Q9H1X1 276 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 SGK2Q9HBY8 427 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 PREX1Q8TCU6 1659 aa10.17□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC15A5A6NIM6 579 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 ADM5C9JUS6 153 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 STX16-NPEPL1H3BU86 382 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 TNFRSF11BO00300 401 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 STX16O14662 325 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 DDNO94850 711 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 RHOQP17081 205 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 SCN1BQ07699 218 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 PTGES3Q15185 160 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 CXCL17Q6UXB2 119 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 OAFQ86UD1 273 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 ZNF781Q8N8C0 355 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 IRGQQ8WZA9 623 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 AHCYL2Q96HN2 611 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 ZSCAN5AQ9BUG6 496 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 TPK1Q9H3S4 243 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 MAGEE1Q9HCI5 957 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 ASAH2Q9NR71 780 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 GULP1Q9UBP9 304 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 NOCTQ9UK39 431 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 PDE10AQ9Y233 779 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 TIMM22Q9Y584 194 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 TCEA3O75764 348 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 GABBR2O75899 941 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 CTSEP14091 401 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 PDHA2P29803 388 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 SEPHS1P49903 392 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 C4orf46Q504U0 113 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 GCNT6Q5T4J0 391 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 IRAK1BP1Q5VVH5 260 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 TEX19Q8NA77 164 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 C11orf65Q8NCR3 313 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 RAB2BQ8WUD1 216 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 LRTOMTQ8WZ04 291 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 BHLHE41Q9C0J9 482 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 EIF2B3Q9NR50 452 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 ARHGEF4Q9NR80 690 aa10.16□□□□□ -0.78
LIMCH1-203ENST00000396595 SUCOQ9UBS9 1254 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms