RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ALYREFQ86V81 257 aaKnown RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 SLC25A41Q8N5S1 370 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 LPCAT1Q8NF37 534 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 C1orf216Q8TAB5 229 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 B4GALT6Q9UBX8 382 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 SLC2A6Q9UGQ3 507 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ANKRD6Q9Y2G4 727 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 STK38LQ9Y2H1 464 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 WDFY4Q6ZS81 3184 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 ATG2BQ96BY7 2078 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 HEATR9A2RTY3 570 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 IGLON5A6NGN9 336 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 PLK4O00444 970 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 FCHO1O14526 889 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 BCAT2O15382 392 aaPredicted RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 SPINT1O43278 529 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 ITM2AO43736 263 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 LYPLA1O75608 230 aaPredicted RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 ATXN1LP0C7T5 689 aaKnown RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 GABRB3P28472 473 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 HMGCLP35914 325 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 SLC1A2P43004 574 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 PTGER3P43115 390 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 MPP1Q00013 466 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 RALGDSQ12967 914 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 THOC5Q13769 683 aaKnown RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 USP10Q14694 798 aaKnown RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 KRT72Q14CN4 511 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 CNGA3Q16281 694 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 SIRPB2Q5JXA9 342 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 PLA2G2CQ5R387 149 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 FAM91A1Q658Y4 838 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 SLC23A3Q6PIS1 610 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 RAPH1Q70E73 1250 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 DENND6AQ8IWF6 608 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 RGL4Q8IZJ4 473 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 MFSD2AQ8NA29 543 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 PIWIL2Q8TC59 973 aaKnown RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 BRSK1Q8TDC3 778 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 PPP4R1Q8TF05 950 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 UTP4Q969X6 686 aaKnown RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 PTCD3Q96EY7 689 aaKnown RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 PRR11Q96HE9 360 aaPredicted RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 RANBP9Q96S59 729 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 FAM167BQ9BTA0 163 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 ZFYVE1Q9HBF4 777 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 NMRAL1Q9HBL8 299 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 NFKBIL1Q9UBC1 381 aaPredicted RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 TLK1Q9UKI8 766 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 ZFR2Q9UPR6 939 aaKnown RBP10.1□□□□□ -0.79
VPS53-202ENST00000389040 DNAJC16Q9Y2G8 782 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 CACNA1HO95180 2353 aa10.1□□□□□ -0.79
VPS53-202ENST00000389040 PLXND1Q9Y4D7 1925 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 NPIPB15A6NHN6 443 aaPredicted RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 G3V2L1 256 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 WNT9AO14904 365 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 LZTS3O60299 673 aaPredicted RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 DFNA5O60443 496 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 APOA4P06727 396 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 HOXC4P09017 264 aaPredicted RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 C6P13671 934 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 SAT1P21673 171 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 PTPN4P29074 926 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 POLD2P49005 469 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 STC1P52823 247 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 YPEL5P62699 121 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 PTSQ03393 145 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 CTBP1Q13363 440 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 ITGA9Q13797 1035 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 CDKN3Q16667 212 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 ZNF470Q6ECI4 717 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 CRTC1Q6UUV9 634 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 LCA5Q86VQ0 697 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 WDR75Q8IWA0 830 aaKnown RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 EFCAB3Q8N7B9 438 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 TMEM145Q8NBT3 493 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 C2CD4AQ8NCU7 369 aaPredicted RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 OR6Y1Q8NGX8 325 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 MAGEC3Q8TD91 643 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 SREK1Q8WXA9 508 aaKnown RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 PEX13Q92968 403 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 NSL1Q96IY1 281 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 COQ10AQ96MF6 247 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 TSNARE1Q96NA8 513 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 ORAI3Q9BRQ5 295 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 NMUR2Q9GZQ4 415 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 ARL8BQ9NVJ2 186 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 PKD2L2Q9NZM6 624 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 BAIAP2L1Q9UHR4 511 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 C1orf232A0A0U1RR37 186 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 C2orf81A6NN90 581 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 A8MUI8 341 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 FPGTO14772 594 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 CHUKO15111 745 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 VILLO15195 856 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 MMP20O60882 483 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 CRTAMO95727 393 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 PAK4O96013 591 aaPredicted RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 ZNF806P0C7X5 589 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 SLC35E2BP0CK96 405 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms