RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 HAS3O00219 553 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 ESRRBO95718 433 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 CHEK2O96017 543 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 RHOQP17081 205 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 HOXB8P17481 243 aaPredicted RBP16.22■□□□□ 0.19
SDC4-201ENST00000372733 NFKBIAP25963 317 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 IDUAP35475 653 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 OPRL1P41146 370 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 MTHFRP42898 656 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 AAK1Q2M2I8 961 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 C6orf136Q5SQH8 315 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 ZFAND4Q86XD8 727 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 HID1Q8IV36 788 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 SPARTQ8N0X7 666 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 CDYL2Q8N8U2 506 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 ITFG1Q8TB96 612 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 ZC3H15Q8WU90 426 aaKnown RBP16.22■□□□□ 0.19
SDC4-201ENST00000372733 NRBF2Q96F24 287 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 CDK15Q96Q40 435 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 GPR21Q99679 349 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 NUSAP1Q9BXS6 441 aaKnown RBP16.22■□□□□ 0.19
SDC4-201ENST00000372733 CCDC68Q9H2F9 335 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 RAD21L1Q9H4I0 556 aa16.22■□□□□ 0.19
SDC4-201ENST00000372733 OR4F21O95013 312 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 ITGB1P05556 798 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 UROSP10746 265 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 OGNP20774 298 aaKnown RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 PIGAP37287 484 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 MRPL19P49406 292 aaKnown RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 NRG1Q02297 640 aaPredicted RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 GSTM4Q03013 218 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 KCNC4Q03721 635 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 CD300CQ08708 224 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 MS4A13Q5J8X5 152 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 OVOS1Q6IE37 1185 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 NIPAL1Q6NVV3 410 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 C8orf59Q8N0T1 100 aaPredicted RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 TEX26Q8N6G2 289 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 IGSF8Q969P0 613 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 GPN2Q9H9Y4 310 aaPredicted RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 CPA4Q9UI42 421 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 PCDHB3Q9Y5E6 796 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 PCDHGA8Q9Y5G5 932 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 XYLBO75191 536 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 DGKQP52824 942 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 RAD51Q06609 339 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 GRIK2Q13002 908 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 LAPTM5Q13571 262 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 CBX2Q14781 532 aaPredicted RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 MEP1AQ16819 746 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 TYSND1Q2T9J0 566 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 TAF2Q6P1X5 1199 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 DLEU7Q6UYE1 221 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 NCCRP1Q6ZVX7 275 aaPredicted RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 PIWIL3Q7Z3Z3 882 aaKnown RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 SPATA2LQ8IUW3 424 aaPredicted RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 GTF3C2Q8WUA4 911 aaPredicted RBP16.21■□□□□ 0.19
SDC4-201ENST00000372733 TMEM248Q9NWD8 314 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 ZIM2Q9NZV7 527 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 MYO16Q9Y6X6 1858 aa16.21■□□□□ 0.19
SDC4-201ENST00000372733 LCHNA4D1U4 455 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 AXIN1O15169 862 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 NOBOXO60393 691 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 PRSS23O95084 383 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 FGF1P05230 155 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 ANXA6P08133 673 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 RAP2AP10114 183 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 RPL9P32969 192 aaKnown RBP16.2■□□□□ 0.18
SDC4-201ENST00000372733 ACVRL1P37023 503 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 HTR6P50406 440 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 TPD52P55327 224 aaPredicted RBP16.2■□□□□ 0.18
SDC4-201ENST00000372733 PRKG2Q13237 762 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 NKG7Q16617 165 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 CTU2Q2VPK5 515 aaKnown RBP16.2■□□□□ 0.18
SDC4-201ENST00000372733 CD300LGQ6UXG3 332 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 TMCO5AQ8N6Q1 288 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 ABHD11Q8NFV4 315 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 OR52B6Q8NGF0 335 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 FBXO30Q8TB52 745 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 MBOAT4Q96T53 435 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 SYTL2Q9HCH5 934 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 TAS2R13Q9NYV9 303 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 UTS2RQ9UKP6 389 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 SLC27A5Q9Y2P5 690 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 TULP3O75386 442 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 GSTM2P28161 218 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 ARL1P40616 181 aaPredicted RBP16.2■□□□□ 0.18
SDC4-201ENST00000372733 TBX4P57082 545 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 PPP1R8Q12972 351 aaKnown RBP16.2■□□□□ 0.18
SDC4-201ENST00000372733 TUBA3CQ13748 450 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 SKIV2LQ15477 1246 aaKnown RBP16.2■□□□□ 0.18
SDC4-201ENST00000372733 FAM98BQ52LJ0 330 aaKnown RBP16.2■□□□□ 0.18
SDC4-201ENST00000372733 RAP1GAP2Q684P5 730 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 ENPP6Q6UWR7 440 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 GPRIN3Q6ZVF9 776 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 CHDHQ8NE62 594 aaPredicted RBP16.2■□□□□ 0.18
SDC4-201ENST00000372733 ERLEC1Q96DZ1 483 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 C1orf74Q96LT6 269 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 FUNDC2Q9BWH2 189 aa16.2■□□□□ 0.18
SDC4-201ENST00000372733 AMBRA1Q9C0C7 1298 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms