RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 HIPK4Q8NE63 616 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 OR8D1Q8WZ84 308 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 LYSMD1Q96S90 227 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 TMEM245Q9H330 911 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 Q9H521 79 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 KCNK12Q9HB15 430 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 IL17CQ9P0M4 197 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 CPSF2Q9P2I0 782 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 FKBPLQ9UIM3 349 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 PSMD13Q9UNM6 376 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 VPS9D1Q9Y2B5 631 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 FNDC3AQ9Y2H6 1198 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 PPIL1Q9Y3C6 166 aa13.04□□□□□ -0.32
SQSTM1-201ENST00000360718 PIKFYVEQ9Y2I7 2098 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 H7C0S8 307 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 AIM2O14862 343 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 ASGR2P07307 311 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 CYP2A6P11509 494 aaPredicted RBP13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 MC4RP32245 332 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 SERPINB5P36952 375 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 IL12RB1P42701 662 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 GALK1P51570 392 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 PGGT1BP53609 377 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 SEMA3AQ14563 771 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 SFT2D3Q587I9 215 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 AARS2Q5JTZ9 985 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 C9orf64Q5T6V5 341 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 ZFP1Q6P2D0 407 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 TMEM126BQ8IUX1 230 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 CATSPER1Q8NEC5 780 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 HCAR2Q8TDS4 363 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 ELMO2Q96JJ3 720 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 OR52B2Q96RD2 323 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 TCF12Q99081 682 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 MRGBPQ9NV56 204 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 INTS10Q9NVR2 710 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 SARDHQ9UL12 918 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 RUVBL2Q9Y230 463 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 SLC30A1Q9Y6M5 507 aa13.03□□□□□ -0.32
SQSTM1-201ENST00000360718 CLDN7O95471 211 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 S1PR4O95977 384 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 STMN1P16949 149 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 TFEBP19484 476 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 PPARGP37231 505 aaPredicted RBP13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 NUDT2P50583 147 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 POU4F1Q01851 419 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 HERC3Q15034 1050 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 ZNF805Q5CZA5 627 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 ZRANB3Q5FWF4 1079 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 PRPF38BQ5VTL8 546 aaKnown RBP13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 CNSTQ6PJW8 725 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 RNF111Q6ZNA4 994 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 STK40Q8N2I9 435 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 SLC44A3Q8N4M1 653 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 PHC3Q8NDX5 983 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 MAPK15Q8TD08 544 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 TSPAN17Q96FV3 270 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 CACNA2D2Q9NY47 1150 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 SUN2Q9UH99 717 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 APPL1Q9UKG1 709 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 CDYLQ9Y232 598 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 ACOT9Q9Y305 439 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 CKAP5Q14008 2032 aa13.02□□□□□ -0.32
SQSTM1-201ENST00000360718 GPR39O43194 453 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 RNASEH1O60930 286 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 NDUFS3O75489 264 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 LHCGRP22888 699 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 MPSTP25325 297 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 TTPAP49638 278 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 KPNA2P52292 529 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 STC1P52823 247 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 ARHGEF7Q14155 803 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 ELAVL3Q14576 367 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 GRAMD1BQ3KR37 738 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 LSM12Q3MHD2 195 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 LIN52Q52LA3 116 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 ARL13AQ5H913 290 aaPredicted RBP13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 FOXB2Q5VYV0 432 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 BNC2Q6ZN30 1099 aaPredicted RBP13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 DSG4Q86SJ6 1040 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 SLC41A1Q8IVJ1 513 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 AGR3Q8TD06 166 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 PBXIP1Q96AQ6 731 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 MCCC1Q96RQ3 725 aaPredicted RBP13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 HEBP1Q9NRV9 189 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 NDUFA13Q9P0J0 144 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 THAP10Q9P2Z0 257 aaPredicted RBP13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 DKK3Q9UBP4 350 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 DTNAQ9Y4J8 743 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 LRRK1Q38SD2 2015 aa13.02□□□□□ -0.33
SQSTM1-201ENST00000360718 ANKRD33BA6NCL7 494 aa13.01□□□□□ -0.33
SQSTM1-201ENST00000360718 UPK3BL1B0FP48 263 aa13.01□□□□□ -0.33
SQSTM1-201ENST00000360718 UPK3BL2E5RIL1 263 aa13.01□□□□□ -0.33
SQSTM1-201ENST00000360718 K7EQS6 105 aa13.01□□□□□ -0.33
SQSTM1-201ENST00000360718 KPNA3O00505 521 aaPredicted RBP13.01□□□□□ -0.33
SQSTM1-201ENST00000360718 NARSO43776 548 aaKnown RBP13.01□□□□□ -0.33
SQSTM1-201ENST00000360718 SORBS2O94875 1100 aaKnown RBP13.01□□□□□ -0.33
SQSTM1-201ENST00000360718 FOSL2P15408 326 aa13.01□□□□□ -0.33
SQSTM1-201ENST00000360718 PEX2P28328 305 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms