RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 COPEO14579 308 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 B3GALNT1O75752 331 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 SEMA3DO95025 777 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 APRTP07741 180 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 RHOCP08134 193 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 MLNP12872 115 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 KCNA4P22459 653 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 FSHRP23945 695 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 HPCAL1P37235 193 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 IFITM3Q01628 133 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 PLCL1Q15111 1095 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 FSCBQ5H9T9 825 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.02□□□□□ -0.8
SYNE1-203ENST00000354674 ALG1LQ6GMV1 187 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 CENPUQ71F23 418 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 FBXW8Q8N3Y1 598 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 CELF5Q8N6W0 485 aaKnown RBP10.02□□□□□ -0.8
SYNE1-203ENST00000354674 LRRC3BQ96PB8 259 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 ALPK1Q96QP1 1244 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 MLPHQ9BV36 600 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-203ENST00000354674 TTYH1Q9H313 450 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-203ENST00000354674 GLOD4Q9HC38 313 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 OLAHQ9NV23 265 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 PNPOQ9NVS9 261 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 WARS2Q9UGM6 360 aaKnown RBP10.02□□□□□ -0.8
SYNE1-203ENST00000354674 TYW5A2RUC4 315 aaKnown RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 FAM149AA5PLN7 773 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 KPNA4O00629 521 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 SCAMP3O14828 347 aaKnown RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 AVILO75366 819 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 AP2A1O95782 977 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 HLA-DQB2P05538 268 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 PIM1P11309 404 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 NFKB1P19838 968 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 STX3Q13277 289 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 CBX2Q14781 532 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 IL23RQ5VWK5 629 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 RSBN1Q5VWQ0 802 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 SLC22A16Q86VW1 577 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 CADM2Q8N3J6 435 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 PPM1NQ8N819 430 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 FBXO36Q8NEA4 188 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 OR7D4Q8NG98 312 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 FIBINQ8TAL6 211 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 WFDC5Q8TCV5 224 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 ITPKCQ96DU7 683 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 ASB16Q96NS5 453 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 PPP1R2P1Q96PQ5 205 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 VPS11Q9H270 941 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 RBM22Q9NW64 420 aaKnown RBP eCLIP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 OBP2AQ9NY56 170 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 MARK1Q9P0L2 795 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 RAB26Q9ULW5 256 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 A8MUA0 341 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 HDAC3O15379 428 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 TCEA3O75764 348 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 ARNTP27540 789 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 FMO4P31512 558 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 TUBA1BP68363 451 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 SLC10A7Q0GE19 358 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 RFTN1Q14699 578 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 RAB39AQ14964 217 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 MARC1Q5VT66 337 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 TUBA1AQ71U36 451 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 OR2T3Q8NH03 318 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 CYGBQ8WWM9 190 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 RSPRY1Q96DX4 576 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 ZNF486Q96H40 463 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 VPS35Q96QK1 796 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 FEM1AQ9BSK4 669 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 PCDHAC1Q9H158 963 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 NOL11Q9H8H0 719 aaKnown RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 SP110Q9HB58 689 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 FANCEQ9HB96 536 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 ADPRHL2Q9NX46 363 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 APOBEC2Q9Y235 224 aaKnown RBP10.02□□□□□ -0.81
SYNE1-203ENST00000354674 IFT52Q9Y366 437 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 TRAF6Q9Y4K3 522 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 MTCH2Q9Y6C9 303 aa10.02□□□□□ -0.81
SYNE1-203ENST00000354674 DENND4AQ7Z401 1863 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 TRIM49D1C9J1S8 452 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 CD160O95971 181 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 BCL10O95999 233 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 CDH1P12830 882 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 TSHRP16473 764 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 PLK1P53350 603 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 ADGRE1Q14246 886 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 FAM78AQ5JUQ0 283 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 RNF219Q5W0B1 726 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-203ENST00000354674 KYAT3Q6YP21 454 aaKnown RBP10.01□□□□□ -0.81
SYNE1-203ENST00000354674 ADGRG2Q8IZP9 1017 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 PDIK1LQ8N165 341 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 PGBD5Q8N414 524 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 CARNMT1Q8N4J0 409 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 FGF13Q92913 245 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 CFAP36Q96G28 342 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 SLC25A51Q9H1U9 297 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 NEK6Q9HC98 313 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 PLSCR3Q9NRY6 295 aa10.01□□□□□ -0.81
SYNE1-203ENST00000354674 TEX264Q9Y6I9 313 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms