RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 NRROSQ86YC3 692 aa21.85■■□□□ 1.09
SHMT1-203ENST00000354098 GSDMBQ8TAX9 411 aa21.85■■□□□ 1.09
SHMT1-203ENST00000354098 HEXDCQ8WVB3 486 aa21.85■■□□□ 1.09
SHMT1-203ENST00000354098 TTC1Q99614 292 aa21.85■■□□□ 1.09
SHMT1-203ENST00000354098 LRRC4CQ9HCJ2 640 aa21.85■■□□□ 1.09
SHMT1-203ENST00000354098 PPANQ9NQ55 473 aaKnown RBP21.85■■□□□ 1.09
SHMT1-203ENST00000354098 TRNAU1APQ9NX07 287 aaKnown RBP21.85■■□□□ 1.09
SHMT1-203ENST00000354098 SLC17A6Q9P2U8 582 aa21.85■■□□□ 1.09
SHMT1-203ENST00000354098 FAM153BP0C7A2 387 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 GIMD1P0DJR0 217 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 ACP5P13686 325 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 CD59P13987 128 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 NSG1P42857 185 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 SLC1A2P43004 574 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 TUBB4BP68371 445 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 ERCC6LQ2NKX8 1250 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 TYSND1Q2T9J0 566 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 FAM153CQ494X1 144 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 UBAP2Q5T6F2 1119 aaKnown RBP21.84■■□□□ 1.09
SHMT1-203ENST00000354098 PACS1Q6VY07 963 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 C3orf62Q6ZUJ4 267 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 GPBAR1Q8TDU6 330 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 UBXN4Q92575 508 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 MOCS1Q9NZB8 636 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 GPR34Q9UPC5 381 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 BTBD3Q9Y2F9 522 aa21.84■■□□□ 1.09
SHMT1-203ENST00000354098 KMOO15229 486 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 YY2O15391 372 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 FFAR2O15552 330 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 NDUFS3O75489 264 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 S1PR4O95977 384 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 OGNP20774 298 aaKnown RBP21.83■■□□□ 1.09
SHMT1-203ENST00000354098 PPARGP37231 505 aaPredicted RBP21.83■■□□□ 1.09
SHMT1-203ENST00000354098 ELOCQ15369 112 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 KYNUQ16719 465 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 DBX2Q6ZNG2 339 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 KCNK6Q9Y257 313 aa21.83■■□□□ 1.09
SHMT1-203ENST00000354098 CABIN1Q9Y6J0 2220 aa21.83■■□□□ 1.08
SHMT1-203ENST00000354098 POP7O75817 140 aaKnown RBP21.82■■□□□ 1.08
SHMT1-203ENST00000354098 PIAS1O75925 651 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 ZNF7P17097 686 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-203ENST00000354098 SLC14A1Q13336 389 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 FRG1Q14331 258 aaKnown RBP21.82■■□□□ 1.08
SHMT1-203ENST00000354098 DEFB133Q30KQ1 61 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 TAF8Q7Z7C8 310 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 FSTL5Q8N475 847 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-203ENST00000354098 FAM167BQ9BTA0 163 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 TSPYL1Q9H0U9 437 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 FBXO6Q9NRD1 293 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-203ENST00000354098 FBXO5Q9UKT4 447 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 CRYL1Q9Y2S2 319 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 PCDHGB2Q9Y5G2 931 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 MPP1Q00013 466 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 ILF3Q12906 894 aaKnown RBP eCLIP21.82■■□□□ 1.086e-6■□□□□ 10.2
SHMT1-203ENST00000354098 SUZ12Q15022 739 aaKnown RBP21.82■■□□□ 1.08
SHMT1-203ENST00000354098 BCL7AQ4VC05 210 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 TEDDM1Q5T9Z0 273 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 SLC30A9Q6PML9 568 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 RELL1Q8IUW5 271 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 CALML6Q8TD86 181 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 LPGAT1Q92604 370 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 ZNF514Q96K75 400 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-203ENST00000354098 TCF12Q99081 682 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 KLC4Q9NSK0 619 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 NINJ2Q9NZG7 142 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 DNAJC16Q9Y2G8 782 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 CSNK1G3Q9Y6M4 447 aa21.82■■□□□ 1.08
SHMT1-203ENST00000354098 PTPRZ1P23471 2315 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-203ENST00000354098 TCRBV9S1A1TA0A576 114 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 UBA6A0AVT1 1052 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-203ENST00000354098 LMO7DNF2Z398 122 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 TRIM38O00635 465 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 PBLDP30039 288 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-203ENST00000354098 ACTR1BP42025 376 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 PRLHRP49683 370 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 ACTR1AP61163 376 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 LRP8Q14114 963 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 NAA30Q147X3 362 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-203ENST00000354098 INSCQ1MX18 579 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 CCNI2Q6ZMN8 369 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-203ENST00000354098 CNTN4Q8IWV2 1026 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 LMNTD2Q8IXW0 634 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 EID2Q8N6I1 236 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 GSDMCQ9BYG8 508 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 P2RY12Q9H244 342 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 CDC42EP4Q9H3Q1 356 aaKnown RBP21.81■■□□□ 1.08
SHMT1-203ENST00000354098 SMYD2Q9NRG4 433 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 SPATS2LQ9NUQ6 558 aaKnown RBP21.81■■□□□ 1.08
SHMT1-203ENST00000354098 GULP1Q9UBP9 304 aa21.81■■□□□ 1.08
SHMT1-203ENST00000354098 NEMP2A6NFY4 417 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 IQCF5A8MTL0 148 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 PRMT5O14744 637 aaPredicted RBP21.8■■□□□ 1.08
SHMT1-203ENST00000354098 SH3BP5O60239 455 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 HAUS5O94927 633 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 GABRB3P28472 473 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 TNFRSF8P28908 595 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 LIMK1P53667 647 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 EIF3BP55884 814 aaKnown RBP21.8■■□□□ 1.08
SHMT1-203ENST00000354098 VSNL1P62760 191 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 MGAT5Q09328 741 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms