RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 TMEM27Q9HBJ8 222 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 CLCA1A8K7I4 914 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 ZNF3P17036 446 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 MAGEA12P43365 314 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 EGFL6Q8IUX8 553 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 OR2L5Q8NG80 312 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 POF1BQ8WVV4 589 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 GPER1Q99527 375 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 DPAGT1Q9H3H5 408 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 FBXO5Q9UKT4 447 aa13.2□□□□□ -0.3
COL6A3-202ENST00000347401 OR7A10O76100 309 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 FSTL1Q12841 308 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 CHRDL2Q6WN34 429 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 LRRC52Q8N7C0 313 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 FAM98AQ8NCA5 519 aaKnown RBP13.19□□□□□ -0.3
COL6A3-202ENST00000347401 CNTNAP4Q9C0A0 1308 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 UBQLN2Q9UHD9 624 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 CENPBD1B2RD01 187 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 TOP3BO95985 862 aaKnown RBP13.19□□□□□ -0.3
COL6A3-202ENST00000347401 LCN1P31025 176 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 MAPK12P53778 367 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 SLC25A52Q3SY17 297 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 SLCO2A1Q92959 643 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 ZNF354BQ96LW1 612 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 AIF1LQ9BQI0 150 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 OR10H1Q9Y4A9 318 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 MAU2Q9Y6X3 613 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 NFASCO94856 1347 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 CNTNAP2Q9UHC6 1331 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 CCNB2O95067 398 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 CD86P42081 329 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 CEBPGP53567 150 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 MAPK10P53779 464 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 GNA12Q03113 381 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 OR5K1Q8NHB7 308 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 FGF19O95750 216 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 CYP11A1P05108 521 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 HMGN1P05114 100 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 KLHL26Q53HC5 615 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 KLHDC10Q6PID8 442 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 ZFPM1Q8IX07 1006 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 GALNT6Q8NCL4 622 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 POFUT2Q9Y2G5 429 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 RAB36O95755 333 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 MT-CO1P00395 513 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 HSD3B1P14060 373 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 POU5F1Q01860 360 aaKnown RBP13.19□□□□□ -0.3
COL6A3-202ENST00000347401 ELMO1Q92556 727 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 RNF31Q96EP0 1072 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 SH2D3AQ9BRG2 576 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 NAV1Q8NEY1 1877 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 AMPD1P23109 780 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 YAP1P46937 504 aaKnown RBP13.19□□□□□ -0.3
COL6A3-202ENST00000347401 GMPSP49915 693 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-202ENST00000347401 HEPACAMQ14CZ8 416 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 ECHDC2Q86YB7 292 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 OR10H5Q8NGA6 315 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 STYXQ8WUJ0 223 aa13.19□□□□□ -0.3
COL6A3-202ENST00000347401 POLR3BQ9NW08 1133 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-202ENST00000347401 VNN2O95498 520 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 ALDH2P05091 517 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 FSHRP23945 695 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 AGTR1P30556 359 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 TCEAL6Q6IPX3 200 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 CAPN13Q6MZZ7 669 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 SNX20Q7Z614 316 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 TNS4Q8IZW8 715 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 FCRL4Q96PJ5 515 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 PTCH2Q9Y6C5 1203 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 DGKBQ9Y6T7 804 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 HTR2AP28223 471 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 FKBP1CQ5VVH2 108 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 FRRS1Q6ZNA5 592 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 GOLM1Q8NBJ4 401 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 NSMCE3Q96MG7 304 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 TPK1Q9H3S4 243 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 FARSBQ9NSD9 589 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 SNCAIPQ9Y6H5 919 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 MAP3K6O95382 1288 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 PRAMEF12O95522 483 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 CDH1P12830 882 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 CFL1P23528 166 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 AMHR2Q16671 573 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 KCTD19Q17RG1 926 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 ANKS1BQ7Z6G8 1248 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 TRAPPC5Q8IUR0 188 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 ADGRG2Q8IZP9 1017 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 KAT2AQ92830 837 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 AHCYL2Q96HN2 611 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 E5RJQ4 531 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 ACOX3O15254 700 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 DFNA5O60443 496 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 IFNA21P01568 189 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 GIMD1P0DJR0 217 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 UBR7Q8N806 425 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 TSEN15Q8WW01 171 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 MYO19Q96H55 970 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 POMPQ9Y244 141 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 CYP4B1P13584 511 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms