RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 ITGB1P05556 798 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 IFNGR1P15260 489 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 FXR1P51114 621 aaKnown RBP eCLIP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 LUMP51884 338 aaPredicted RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 PTPN11Q06124 597 aaPredicted RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 FOXR1Q6PIV2 292 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 UBE2R2Q712K3 238 aaPredicted RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 MAP3K14Q99558 947 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 SGK2Q9HBY8 427 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 CCKBRP32239 447 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 ORC1Q13415 861 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 ZER1Q7Z7L7 766 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 DPF3Q92784 378 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 KCNN1Q92952 543 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 PGAP3Q96FM1 320 aaPredicted RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 XPNPEP3Q9NQH7 507 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 DDX43Q9NXZ2 648 aaKnown RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 PLAGL2Q9UPG8 496 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 WFS1O76024 890 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 ADH1CP00326 375 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 GFOD2Q3B7J2 385 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 SNAP47Q5SQN1 464 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 GALNT5Q7Z7M9 940 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 AARSD1Q9BTE6 412 aaKnown RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 NEPROQ6NW34 567 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 TAS1R3Q7RTX0 852 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 PCDH20Q8N6Y1 951 aaKnown RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 RANBP3Q9H6Z4 567 aaPredicted RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 TBC1D17Q9HA65 648 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 CPSF4LA6NMK7 179 aaKnown RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 EFCAB9A8MZ26 197 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 ENTPD6O75354 484 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 UNC5CO95185 931 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 IFNW1P05000 195 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 ITGA5P08648 1049 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 OR2B6P58173 313 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 MIR1-1HGQ9H1L0 117 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 EIF4BP23588 611 aaKnown RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 HFE2Q6ZVN8 426 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 CEP97Q8IW35 865 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 PHC2Q8IXK0 858 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 PCDHGA8Q9Y5G5 932 aa17.48■□□□□ 0.39
SMAD4-201ENST00000342988 CHD2O14647 1828 aaKnown RBP17.48■□□□□ 0.39
SMAD4-201ENST00000342988 ATG12O94817 140 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 RAB36O95755 333 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 PARP6Q2NL67 630 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 EIF5A2Q9GZV4 153 aaKnown RBP17.47■□□□□ 0.39
SMAD4-201ENST00000342988 PLEKHA3Q9HB20 300 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 RAP2CQ9Y3L5 183 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 TVP23AA6NH52 213 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 ZNF705EA8MWA4 302 aaPredicted RBP17.47■□□□□ 0.39
SMAD4-201ENST00000342988 LRATO95237 230 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 GRIA1P42261 906 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 KLK7P49862 253 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 SLC38A4Q969I6 547 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 UCK2Q9BZX2 261 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 BRD7Q9NPI1 651 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 NME6O75414 186 aaPredicted RBP17.47■□□□□ 0.39
SMAD4-201ENST00000342988 CBX6O95503 412 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 ELFN1P0C7U0 828 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 C8orf48Q96LL4 319 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 MYNNQ9NPC7 610 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 NUP214P35658 2090 aaPredicted RBP17.47■□□□□ 0.39
SMAD4-201ENST00000342988 ATP5C1P36542 298 aaKnown RBP17.47■□□□□ 0.39
SMAD4-201ENST00000342988 BLMHQ13867 455 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 TC2NQ8N9U0 490 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 KCTD7Q96MP8 289 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 TRMOQ9BU70 441 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 PCBD2Q9H0N5 130 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 ASXL2Q76L83 1435 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 GNB3P16520 340 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 ABRAXAS2Q15018 415 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 ZFP3Q96NJ6 502 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 ERVK-11Q9UQG0 969 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 SPEF2Q9C093 1822 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 DISC1C4P0D8 188 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 MAPK12P53778 367 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 PFKPQ01813 784 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 OR2T34Q8NGX1 318 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 OR2T3Q8NH03 318 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 IL1BP01584 269 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 ZNF35P13682 527 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 VAMP1P23763 118 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 MTX3Q5HYI7 312 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 OR10G6Q8NH81 332 aa17.47■□□□□ 0.39
SMAD4-201ENST00000342988 MAPKBP1O60336 1514 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 TNFRSF11BO00300 401 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 VILLO15195 856 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 CPNE3O75131 537 aaKnown RBP17.46■□□□□ 0.39
SMAD4-201ENST00000342988 SGPL1O95470 568 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 NUDT7P0C024 238 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 ANTXR2P58335 489 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 P4HA3Q7Z4N8 544 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 OR6K6Q8NGW6 343 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 DPAGT1Q9H3H5 408 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 CD86P42081 329 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 ELF3P78545 371 aaPredicted RBP17.46■□□□□ 0.39
SMAD4-201ENST00000342988 CAPN13Q6MZZ7 669 aaPredicted RBP17.46■□□□□ 0.39
SMAD4-201ENST00000342988 POMZP3Q6PJE2 187 aa17.46■□□□□ 0.39
SMAD4-201ENST00000342988 ARHGAP12Q8IWW6 846 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms