RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HERVK_113P63132 956 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 ABRQ12979 859 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 LSAMPQ13449 338 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 LPIN1Q14693 890 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 KCTD8Q6ZWB6 473 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 ARL14EPQ8N8R7 260 aaPredicted RBP11.82□□□□□ -0.52
USP1-201ENST00000339950 OR13J1Q8NGT2 312 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 UTP15Q8TED0 518 aaKnown RBP11.82□□□□□ -0.52
USP1-201ENST00000339950 ZFAND2BQ8WV99 257 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 MAGED4Q96JG8 741 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 FEM1AQ9BSK4 669 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 BOCQ9BWV1 1114 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 ERVK-6Q9BXR3 956 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 MIR1-1HGQ9H1L0 117 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 ZDHHC4Q9NPG8 344 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 FARSBQ9NSD9 589 aaKnown RBP11.82□□□□□ -0.52
USP1-201ENST00000339950 RAB26Q9ULW5 256 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 TMCO1Q9UM00 188 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 OR2AG2A6NM03 316 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 GABRDO14764 452 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 HIST1H2AGP0C0S8 130 aaPredicted RBP11.82□□□□□ -0.52
USP1-201ENST00000339950 HIST1H2ADP20671 130 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 MTHFRP42898 656 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 OGFRL1Q5TC84 451 aaPredicted RBP11.82□□□□□ -0.52
USP1-201ENST00000339950 FAM91A1Q658Y4 838 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 KRTCAP2Q8N6L1 136 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 ZFYVE19Q96K21 471 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 HIST1H2AHQ96KK5 128 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 HIST1H2AJQ99878 128 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 RTP3Q9BQQ7 232 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 H2AFJQ9BTM1 129 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 OSBPL11Q9BXB4 747 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 PNPLA3Q9NST1 481 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 SPASTQ9UBP0 616 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 KIF13BQ9NQT8 1826 aa11.82□□□□□ -0.52
USP1-201ENST00000339950 A0A087WXM4 84 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 LOC100506127A0A0U1RQW1 187 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ASLP04424 464 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 IDH2P48735 452 aaKnown RBP11.81□□□□□ -0.52
USP1-201ENST00000339950 RGS4P49798 205 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 LCP2Q13094 533 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ZNF697Q5TEC3 545 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 TXNDC8Q6A555 127 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ALKAL1Q6UXT8 129 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 RNF180Q86T96 592 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 SPPL2AQ8TCT8 520 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 OTULINQ96BN8 352 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ABHD8Q96I13 439 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 OR52E6Q96RD3 313 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 OPTCQ9UBM4 332 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 PNMA8CA0A1B0GUJ8 204 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ZSCAN9O15535 394 aaPredicted RBP11.81□□□□□ -0.52
USP1-201ENST00000339950 NDST3O95803 873 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 GLUD1P00367 558 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 BMP1P13497 986 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 POU2F1P14859 743 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 SOAT1P35610 550 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ARCN1P48444 511 aaKnown RBP11.81□□□□□ -0.52
USP1-201ENST00000339950 XIAPP98170 497 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 DMC1Q14565 340 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 STARD3Q14849 445 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 CRY1Q16526 586 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 KCTD11Q693B1 232 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ZNF554Q86TJ5 538 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 CMTR2Q8IYT2 770 aaKnown RBP11.81□□□□□ -0.52
USP1-201ENST00000339950 LINC01465Q8N7H1 131 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ZC3H15Q8WU90 426 aaKnown RBP11.81□□□□□ -0.52
USP1-201ENST00000339950 TRIB2Q92519 343 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ZDHHC6Q9H6R6 413 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.81□□□□□ -0.52
USP1-201ENST00000339950 DMTF1Q9Y222 760 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 SH3GLB1Q9Y371 365 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 NRXN2Q9P2S2 1712 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 GNG14A0A1W2PPG7 69 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 DFNA5O60443 496 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 MFN2O95140 757 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 PRAMEF1O95521 474 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 COL6A1P12109 1028 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 CCT8P50990 548 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 NUP107P57740 925 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 VEPH1Q14D04 833 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 SYVN1Q86TM6 617 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 CCDC103Q8IW40 242 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 SIX5Q8N196 739 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 CAPSLQ8WWF8 208 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 DACH2Q96NX9 599 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 MTERF1Q99551 399 aaKnown RBP11.81□□□□□ -0.52
USP1-201ENST00000339950 C11orf84Q9BUA3 381 aaPredicted RBP11.81□□□□□ -0.52
USP1-201ENST00000339950 BDH2Q9BUT1 245 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 C9orf16Q9BUW7 83 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 C1QTNF1Q9BXJ1 281 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.81□□□□□ -0.52
USP1-201ENST00000339950 ZNF451Q9Y4E5 1061 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 ASB1Q9Y576 335 aa11.81□□□□□ -0.52
USP1-201ENST00000339950 GREB1LQ9C091 1923 aaPredicted RBP11.81□□□□□ -0.52
USP1-201ENST00000339950 A0A0U1RQF3 1178 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 TRIM43BA6NCK2 446 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 SAP18O00422 153 aaKnown RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 NPHS1O60500 1241 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ULK1O75385 1050 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms