RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 BACE1P56817 501 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 SIM2Q14190 667 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 NPTX1Q15818 432 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 GPR162Q16538 588 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 TTC23Q5W5X9 447 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 RFPL4BQ6ZWI9 263 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 BEND5Q7L4P6 421 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 NLGN4XQ8N0W4 816 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 EDEM1Q92611 657 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 BHMTQ93088 406 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 WNT8BQ93098 351 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 UBE2FQ969M7 185 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 LGALS12Q96DT0 336 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 ZNF300Q96RE9 604 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 TESMINQ9Y4I5 508 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 MICAL3Q7RTP6 2002 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 SLC22A1O15245 554 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 PFKLP17858 780 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 POLR2AP24928 1970 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 SNX16P57768 344 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 HERVK_113P63132 956 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 CDK5R2Q13319 367 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 TNFAIP1Q13829 316 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 SYT16Q17RD7 645 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 AASDHQ4L235 1098 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 WDR45BQ5MNZ6 344 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 AURKBQ96GD4 344 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 MYOCQ99972 504 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 ERVK-6Q9BXR3 956 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 ASPSCR1Q9BZE9 553 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 PLSCR3Q9NRY6 295 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 POLR3BQ9NW08 1133 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 QPCTLQ9NXS2 382 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 SNTG2Q9NY99 539 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 TRHDEQ9UKU6 1024 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 AKT3Q9Y243 479 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 PCDHGA10Q9Y5H3 936 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 IGFBP6P24592 240 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 DGKQP52824 942 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 ZNF280AP59817 542 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 OR4D1Q15615 310 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 FSCN1Q16658 493 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 CELF3Q5SZQ8 465 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 CCBE1Q6UXH8 406 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 LRRC49Q8IUZ0 686 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 OR7G1Q8NGA0 311 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 OR6P1Q8NGX9 317 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 PPP1R13LQ8WUF5 828 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 AFG1LQ8WV93 481 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 PYCR2Q96C36 320 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 SYT17Q9BSW7 474 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 GOLGA2P5Q9HBQ8 144 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 MAGEE1Q9HCI5 957 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 WDR6Q9NNW5 1121 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 DDX28Q9NUL7 540 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 MARCH4Q9P2E8 410 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 FAM92AA1XBS5 289 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 NCF1BA6NI72 391 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 YJEFN3A6XGL0 299 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 NCF1CA8MVU1 366 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 DNTTP04053 509 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 LCKP06239 509 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 NCF1P14598 390 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 CHRNB3Q05901 458 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 EPS8Q12929 822 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 PTPRCAPQ14761 206 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 CRY1Q16526 586 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 SOWAHCQ53LP3 525 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 PLD3Q8IV08 490 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 SLC22A9Q8IVM8 553 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 HSFY1Q96LI6 401 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 GPR20Q99678 358 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 BARD1Q99728 777 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 SIK2Q9H0K1 926 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 RNF167Q9H6Y7 350 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 CPNE5Q9HCH3 593 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 TREX1Q9NSU2 369 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 OR12D3Q9UGF7 316 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 KCTD3Q9Y597 815 aa13.31□□□□□ -0.28
CCDC88C-201ENST00000331194 MATN4O95460 622 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 CYBBP04839 570 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 EIF2S1P05198 315 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 CYP2C8P10632 490 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 ALOX12P18054 663 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 SERPINB10P48595 397 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 CDC20Q12834 499 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 CLCA4Q14CN2 919 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 SNAP47Q5SQN1 464 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 PDZD4Q76G19 769 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 YIPF6Q96EC8 236 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 TBCDQ9BTW9 1192 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 PRMT7Q9NVM4 692 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 DDIT4Q9NX09 232 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 ADPRHL2Q9NX46 363 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 LIMD1Q9UGP4 676 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 LCTP09848 1927 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 SOWAHBA6NEL2 793 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 ANGPTL1O95841 491 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 MT-ND2P03891 347 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 RAP2AP10114 183 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms