RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 CHD7Q9P2D1 2997 aa15.41■□□□□ 0.06
SHROOM1-201ENST00000319854 SUPT3HB4E1H0 165 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 LSM1O15116 133 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 UBDO15205 165 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 IDUAP35475 653 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SLC11A2P49281 568 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SLC7A2P52569 658 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 TRAP1Q12931 704 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 NOGQ13253 232 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 HABP4Q5JVS0 413 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 RNF219Q5W0B1 726 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 MRNIPQ6NTE8 343 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 DHFR2Q86XF0 187 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 PELI3Q8N2H9 469 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 CARNMT1Q8N4J0 409 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SCAIQ8N9R8 606 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 PPP1R2P1Q96PQ5 205 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 GPBP1L1Q9HC44 474 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 LOC285095A0A1B0GVY8 99 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 A8MU76 341 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 CNOT3O75175 753 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SRP72O76094 671 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 RBP1P09455 135 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 CTPS1P17812 591 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 MAP4P27816 1152 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 NRG1Q02297 640 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 FASTKQ14296 549 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 ZRANB3Q5FWF4 1079 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 GABPB2Q8TAK5 448 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SEPT8Q92599 483 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 PBXIP1Q96AQ6 731 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 CDKN2AIPNLQ96HQ2 116 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 CCDC68Q9H2F9 335 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SPAG4Q9NPE6 437 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SCUBE2Q9NQ36 999 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 EGFL7Q9UHF1 273 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 TIMM22Q9Y584 194 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 RNF103-CHMP3A0A140T963 221 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 DRGXA6NNA5 263 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 CLOCKO15516 846 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 ITGB6P18564 788 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 NR4A1P22736 598 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 HOXD10P28358 340 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 ZNF177Q13360 481 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 TRIM16LQ309B1 348 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 PERM1Q5SV97 790 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 ATXN7L2Q5T6C5 722 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 TAS2R42Q7RTR8 314 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SPPL2CQ8IUH8 684 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 TEX26Q8N6G2 289 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 PCYOX1LQ8NBM8 494 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 TNIP2Q8NFZ5 429 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 UBXN10Q96LJ8 280 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 HBEGFQ99075 208 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 GIN1Q9NXP7 522 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 TMEM181Q9P2C4 612 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 SARDHQ9UL12 918 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 OAZ3Q9UMX2 235 aa15.4■□□□□ 0.06
SHROOM1-201ENST00000319854 TRPC5OSA6NMA1 111 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 NDUFS3O75489 264 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 PABPC1P11940 636 aaKnown RBP15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 CCNA2P20248 432 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 GKP32189 559 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 SH3BP2P78314 561 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 ACAP2Q15057 778 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 PTPRNQ16849 979 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 TBCELQ5QJ74 424 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 ANKS3Q6ZW76 656 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 CAMK1DQ8IU85 385 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 CMTR2Q8IYT2 770 aaKnown RBP15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 MDGA1Q8NFP4 955 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 BPIFB6Q8NFQ5 453 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 STARD8Q92502 1023 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 SGCDQ92629 289 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 TOP1MTQ969P6 601 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 MAELQ96JY0 434 aaKnown RBP15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 DEFB118Q96PH6 123 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 SLC22A12Q96S37 553 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 EFHD1Q9BUP0 239 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 HERC2P3Q9BVR0 1158 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 FKBPLQ9UIM3 349 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 CDC7O00311 574 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 INPPL1O15357 1258 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 RPP40O75818 363 aaKnown RBP15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 LINC00032P0C843 101 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 PAX3P23760 479 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 OXTRP30559 389 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 NKX3-2P78367 333 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 TSNQ15631 228 aaKnown RBP15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 HECTD3Q5T447 861 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 NANOGNBQ7Z5D8 188 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 NPAS4Q8IUM7 802 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 PIANPQ8IYJ0 282 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 OR2T34Q8NGX1 318 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 OR2T3Q8NH03 318 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 BRSK1Q8TDC3 778 aa15.39■□□□□ 0.05
SHROOM1-201ENST00000319854 C17orf50Q8WW18 174 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms