RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 ADGRE1Q14246 886 aa12.54□□□□□ -0.4
USP38-201ENST00000307017 GRM3Q14832 879 aa12.54□□□□□ -0.4
USP38-201ENST00000307017 GMCL1P1Q8NEA9 526 aa12.54□□□□□ -0.4
USP38-201ENST00000307017 CUEDC1Q9NWM3 386 aaPredicted RBP12.54□□□□□ -0.4
USP38-201ENST00000307017 MAPRE3Q9UPY8 281 aa12.54□□□□□ -0.4
USP38-201ENST00000307017 LRRC72A6NJI9 287 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 ELFN1P0C7U0 828 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 TIMM50Q3ZCQ8 353 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 CRTC2Q53ET0 693 aaPredicted RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 TMEM198Q66K66 360 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 PDE12Q6L8Q7 609 aaKnown RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 TNFAIP8L2Q6P589 184 aaPredicted RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 SLC43A3Q8NBI5 491 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 ZNF226Q9NYT6 803 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 GMIPQ9P107 970 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 PLAGL1Q9UM63 463 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 PLCL2Q9UPR0 1127 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 TRIM17Q9Y577 477 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 NFASCO94856 1347 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 TULP4Q9NRJ4 1543 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 OR4F21O95013 312 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 GDF10P55107 478 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 ECT2LQ008S8 904 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 LRRC37A5PQ49AS3 106 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 ATXN7L2Q5T6C5 722 aaPredicted RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 KLHL35Q6PF15 583 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 UBR7Q8N806 425 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 OR6K6Q8NGW6 343 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 ELOVL4Q9GZR5 314 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 CDC42BPAQ5VT25 1732 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 A0A1B0GVT2 93 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 CST3P01034 146 aaPredicted RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 ITGAVP06756 1048 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 BPGMP07738 259 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 GRK5P34947 590 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 ALDH3A2P51648 485 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 MYBPC3Q14896 1274 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 TAPT1Q6NXT6 567 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 C1orf186Q6ZWK4 172 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 ATCAYQ86WG3 371 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 OR5T3Q8NGG3 340 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 BORCS5Q969J3 196 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 VCPIP1Q96JH7 1222 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 ZDHHC15Q96MV8 337 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 LENG8Q96PV6 779 aaPredicted RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 RTKNQ9BST9 563 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 PCDHGC4Q9Y5F7 938 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 TRAV19A0A0A6YYK7 116 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 A0A1W2PPK0 400 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 KCNA5P22460 613 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 CTNNB1P35222 781 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 S100A10P60903 97 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 SNRPD1P62314 119 aaKnown RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 LRP8Q14114 963 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 SYT16Q17RD7 645 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 MINDY4Q4G0A6 757 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 FIGNQ5HY92 759 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 SYCE2Q6PIF2 218 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.53□□□□□ -0.41e-8■■■■□ 24.5
USP38-201ENST00000307017 SLC25A36Q96CQ1 311 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 TCHHQ07283 1943 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 AIREO43918 545 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 LYNP07948 512 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 UBA1P22314 1058 aaKnown RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 ARFIP1P53367 373 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 GBE1Q04446 702 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 CBX2Q14781 532 aaPredicted RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 TMEM236Q5W0B7 351 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 C12orf50Q8NA57 414 aaPredicted RBP12.53□□□□□ -0.4
USP38-201ENST00000307017 ASB2Q96Q27 587 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 EBF2Q9HAK2 575 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 DNAJC28Q9NX36 388 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 RHCGQ9UBD6 479 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 VPS51Q9UID3 782 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 PLA2R1Q13018 1463 aa12.53□□□□□ -0.4
USP38-201ENST00000307017 TRMUO75648 421 aaKnown RBP12.52□□□□□ -0.4
USP38-201ENST00000307017 CLIC3O95833 236 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 MSX1P28360 303 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 LSM12Q3MHD2 195 aaKnown RBP12.52□□□□□ -0.4
USP38-201ENST00000307017 LCN1P1Q5VSP4 162 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 OR2T34Q8NGX1 318 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 OR2T3Q8NH03 318 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 BRSK1Q8TDC3 778 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 EZH1Q92800 747 aaPredicted RBP12.52□□□□□ -0.4
USP38-201ENST00000307017 COQ8BQ96D53 544 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 FCRL2Q96LA5 508 aaPredicted RBP12.52□□□□□ -0.4
USP38-201ENST00000307017 ACO2Q99798 780 aaKnown RBP12.52□□□□□ -0.4
USP38-201ENST00000307017 TTLL2Q9BWV7 592 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 ATP13A3Q9H7F0 1226 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 HDAC3O15379 428 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 PRKD3O94806 890 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 OTCP00480 354 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 CYP2C18P33260 490 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 EIF2S3LQ2VIR3 472 aaKnown RBP12.52□□□□□ -0.4
USP38-201ENST00000307017 PLET1Q6UQ28 207 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 USP30Q70CQ3 517 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 SUCOQ9UBS9 1254 aaKnown RBP12.52□□□□□ -0.4
USP38-201ENST00000307017 PCYOX1Q9UHG3 505 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 ABCA8O94911 1581 aa12.52□□□□□ -0.4
USP38-201ENST00000307017 OR1F1O43749 312 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms