RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SLC25A14O95258 325 aaPredicted RBP16.44■□□□□ 0.22
VPS54-201ENST00000272322 IL10P22301 178 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 PSMA4P25789 261 aaKnown RBP16.44■□□□□ 0.22
VPS54-201ENST00000272322 OR4D2P58180 307 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 MRPL58Q14197 206 aaKnown RBP16.44■□□□□ 0.22
VPS54-201ENST00000272322 RBBP5Q15291 538 aaKnown RBP16.44■□□□□ 0.22
VPS54-201ENST00000272322 SLC14A2Q15849 920 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 ADGRF1Q5T601 910 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 KIAA2013Q8IYS2 634 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 FBXO30Q8TB52 745 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 FIG4Q92562 907 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 AURKBQ96GD4 344 aaPredicted RBP16.44■□□□□ 0.22
VPS54-201ENST00000272322 HIC2Q96JB3 615 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 THUMPD3Q9BV44 507 aaKnown RBP16.44■□□□□ 0.22
VPS54-201ENST00000272322 PCTPQ9UKL6 214 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 RAB26Q9ULW5 256 aa16.44■□□□□ 0.22
VPS54-201ENST00000272322 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.44■□□□□ 0.22
VPS54-201ENST00000272322 CEP290O15078 2479 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 DENRO43583 198 aaKnown RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 PABPC4LP0CB38 370 aaKnown RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 HMOX2P30519 316 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 ABRAXAS2Q15018 415 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 TAF1AQ15573 450 aaPredicted RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 PHKG1Q16816 387 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 ATP6AP1LQ52LC2 224 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 C6orf136Q5SQH8 315 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 OR4F6Q8NGB9 312 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 ADGRE3Q9BY15 652 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 IPPKQ9H8X2 491 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 U3KQV3 271 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 VWA8A3KMH1 1905 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 KDELR3O43731 214 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 CLDN11O75508 207 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 RSL1D1O76021 490 aaKnown RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 LRATO95237 230 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 PARNO95453 639 aaKnown RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 IGLV3-27P01718 113 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 NEK2P51955 445 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 FAM189BP81408 668 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 IL1RL1Q01638 556 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 AP5B1Q2VPB7 878 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 KANK2Q63ZY3 851 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 ANKRD34AQ69YU3 496 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 SERPINA9Q86WD7 417 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 TICAM1Q8IUC6 712 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 PHYKPLQ8IUZ5 450 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 FAM126BQ8IXS8 530 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 RNF175Q8N4F7 328 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 CLSTN3Q9BQT9 956 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 SRRDQ9UH36 339 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 VPS51Q9UID3 782 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 ZFC3H1O60293 1989 aaKnown RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 ASPDHA6ND91 283 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 SLC22A2O15244 555 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 CD160O95971 181 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 EEF1B2P24534 225 aaKnown RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 POLR2JP52435 117 aaKnown RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 XIAPP98170 497 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 PYCR3Q53H96 274 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 CXorf57Q6NSI4 855 aaKnown RBP16.43■□□□□ 0.22
VPS54-201ENST00000272322 Q6ZSR9 355 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 CATSPER1Q8NEC5 780 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 SMOXQ9NWM0 555 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 EYSQ5T1H1 3165 aa16.43■□□□□ 0.22
VPS54-201ENST00000272322 A0A1B0GVM2 712 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 SNUPNO95149 360 aaKnown RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 WISP3O95389 354 aaPredicted RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 TSPAN12O95859 305 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 TSTA3Q13630 321 aaPredicted RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 NANOGP8Q6NSW7 305 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 TTC33Q6PID6 262 aaPredicted RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 MFN1Q8IWA4 741 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 HS3ST5Q8IZT8 346 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 OR56A4Q8NGH8 313 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 BEGAINQ9BUH8 593 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 CLPBQ9H078 707 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.42■□□□□ 0.22
VPS54-201ENST00000272322 NANOGQ9H9S0 305 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 HMX1Q9NP08 348 aaPredicted RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 CPQQ9Y646 472 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 GON4LQ3T8J9 2241 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 HSPA14Q0VDF9 509 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 GRM2Q14416 872 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 GTDC1Q4AE62 458 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 BLOC1S3Q6QNY0 202 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 DNAJB7Q7Z6W7 309 aaPredicted RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 PHACTR4Q8IZ21 702 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 SFRP1Q8N474 314 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 KRTCAP2Q8N6L1 136 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 VN1R3Q9BXE9 311 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 DERL2Q9GZP9 239 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 SDR39U1Q9NRG7 319 aaPredicted RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 GID8Q9NWU2 228 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 CRLS1Q9UJA2 301 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 GPR45Q9Y5Y3 372 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 SCN4AP35499 1836 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 ARVCFO00192 962 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 HMGA1P17096 107 aaKnown RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 OGNP20774 298 aaKnown RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 FASP25445 335 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms