RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 RALGPS2Q86X27 583 aaPredicted RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ZSCAN4Q8NAM6 433 aaPredicted RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 GTPBP3Q969Y2 492 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 MYH3P11055 1940 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 E7ENX8 843 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 KDELR1P24390 212 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 MAPK12P53778 367 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 NOMO2Q5JPE7 1267 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 HDAC10Q969S8 669 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ARMC5Q96C12 935 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 MTMR9Q96QG7 549 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 TRNAU1APQ9NX07 287 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 EPHX1P07099 455 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 EPHA3P29320 983 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PTGS2P35354 604 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 TROAPQ12815 778 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 HECTD2Q5U5R9 776 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 TMEM17Q86X19 198 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 NOL11Q9H8H0 719 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 CERS4Q9HA82 394 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 TCHHQ07283 1943 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PLK4O00444 970 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 FABP3P05413 133 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PVALBP20472 110 aaPredicted RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 VPS26BQ4G0F5 336 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF280BQ86YH2 543 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 GJD3Q8N144 294 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 COX18Q8N8Q8 333 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 GALNT11Q8NCW6 608 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PIWIL2Q8TC59 973 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 FAM110BQ8TC76 370 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ABHD16BQ9H3Z7 469 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 KIAA1522Q9P206 1035 aaPredicted RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 PLAGL2Q9UPG8 496 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 HBS1LQ9Y450 684 aaKnown RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 MYH8P13535 1937 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ZMYM2Q9UBW7 1377 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 APOC4-APOC2K7ER74 178 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 APOC2P02655 101 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ZSCAN5DPP0CG00 497 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF135P52742 658 aaPredicted RBP11.29□□□□□ -0.6
PTPN4-201ENST00000263708 TMEM161BQ8NDZ6 487 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 MALT1Q9UDY8 824 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 RIC1Q4ADV7 1423 aa11.29□□□□□ -0.6
PTPN4-201ENST00000263708 AZIN1O14977 448 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 OAZ2O95190 189 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 GPR158Q5T848 1215 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ZFP3Q96NJ6 502 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 IL12RB2Q99665 862 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 RIOK2Q9BVS4 552 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TREM1Q9NP99 234 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 FSTL1Q12841 308 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 RRP1BQ14684 758 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 MAP1SQ66K74 1059 aaPredicted RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ANO7Q6IWH7 933 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 C4orf19Q8IY42 314 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 OR5M3Q8NGP4 307 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 HNRNPLLQ8WVV9 542 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 HSPA12AO43301 675 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 BANF1O75531 89 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 GLUD1P00367 558 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 SP2Q02086 613 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 SLC10A7Q0GE19 358 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ST3GAL4Q11206 333 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 FAM76BQ5HYJ3 339 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 FRMD7Q6ZUT3 714 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 C12orf66Q96MD2 445 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TCF12Q99081 682 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 MAP3K14Q99558 947 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 IFT27Q9BW83 186 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 EBPLQ9BY08 206 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 RMI1Q9H9A7 625 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TRPV4Q9HBA0 871 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 FANCFQ9NPI8 374 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TMEM51Q9NW97 253 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 CUEDC1Q9NWM3 386 aaPredicted RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ADAM28Q9UKQ2 775 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 WASF3Q9UPY6 502 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 H3BSH0 61 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 CD2P06729 351 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 COL6A1P12109 1028 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ETS2P15036 469 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ECH1Q13011 328 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 GRHL2Q6ISB3 625 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 AHSA2Q719I0 299 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ANKS1BQ7Z6G8 1248 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 RCN3Q96D15 328 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 RTKNQ9BST9 563 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 PCDHGA6Q9Y5G7 932 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 A0A0G2JPF8 293 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 HNRNPCL3B7ZW38 293 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 M0R129 80 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TNFRSF11BO00300 401 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 SLC35G6P0C7Q6 338 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 HNRNPCL4P0DMR1 293 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 GABRR2P28476 465 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 MAT2AP31153 395 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 PTDSS1P48651 473 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 NR1H2P55055 460 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms