RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 OTUD5Q96G74 571 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 COLEC11Q9BWP8 271 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 ERVK-6Q9BXR3 956 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 BEX2Q9BXY8 128 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.23□□□□□ -0.136e-7■■□□□ 12.5
SDC1-201ENST00000254351 HACL1Q9UJ83 578 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 BBIP1A8MTZ0 92 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 ZNF487B1APH4 448 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 AP3D1O14617 1153 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 IDH3BO43837 385 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 RFPL2O75678 378 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 ALOX5P09917 674 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 AASDHQ4L235 1098 aaPredicted RBP14.22□□□□□ -0.13
SDC1-201ENST00000254351 PRMT9Q6P2P2 845 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 HACD2Q6Y1H2 254 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 TRPM4Q8TD43 1214 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 FAR1Q8WVX9 515 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.22□□□□□ -0.134e-6■■■■□ 19.6
SDC1-201ENST00000254351 CCDC126Q96EE4 140 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 ZHX1-C8orf76Q96EF9 292 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 ZNF641Q96N77 438 aaPredicted RBP14.22□□□□□ -0.13
SDC1-201ENST00000254351 BARD1Q99728 777 aaKnown RBP14.22□□□□□ -0.13
SDC1-201ENST00000254351 SDR39U1Q9NRG7 319 aaPredicted RBP14.22□□□□□ -0.13
SDC1-201ENST00000254351 TRHDEQ9UKU6 1024 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 IGKV6-21A0A0C4DH24 114 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 RECQL5O94762 991 aaPredicted RBP14.22□□□□□ -0.13
SDC1-201ENST00000254351 PRKD3O94806 890 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 KRT8P05787 483 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 CYP2C8P10632 490 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 FMO4P31512 558 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 TP53BP2Q13625 1128 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 TUBA3CQ13748 450 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 HIST2H2ACQ16777 129 aaPredicted RBP14.22□□□□□ -0.13
SDC1-201ENST00000254351 OSTM1Q86WC4 334 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 SLC22A9Q8IVM8 553 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 FAM126BQ8IXS8 530 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 ZNF540Q8NDQ6 660 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 OR6Q1Q8NGQ2 317 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 STON2Q8WXE9 905 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 MUL1Q969V5 352 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 HOXD1Q9GZZ0 328 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 DSN1Q9H410 356 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 WDR6Q9NNW5 1121 aaKnown RBP14.22□□□□□ -0.13
SDC1-201ENST00000254351 SARS2Q9NP81 518 aaKnown RBP14.22□□□□□ -0.13
SDC1-201ENST00000254351 GALPQ9UBC7 116 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 ADGRE2Q9UHX3 823 aa14.22□□□□□ -0.13
SDC1-201ENST00000254351 EIF3FO00303 357 aaPredicted RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 PRMT5O14744 637 aaPredicted RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 CHRNA1P02708 482 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 ICAM3P32942 547 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 ILF2Q12905 390 aaKnown RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 CAMK2BQ13554 666 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 FSCN1Q16658 493 aaKnown RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 C9orf57Q5W0N0 161 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 WSCD1Q658N2 575 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 RAB44Q7Z6P3 723 aaPredicted RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 BLOC1S5Q8TDH9 187 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 FAM162AQ96A26 154 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 AURKBQ96GD4 344 aaPredicted RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 TBATAQ96M53 351 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 PRRG3Q9BZD7 231 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 MAGEE1Q9HCI5 957 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 NT5MQ9NPB1 228 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 TRMT13Q9NUP7 481 aaKnown RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 TMEM30AQ9NV96 361 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 ADPRHL2Q9NX46 363 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 RCOR3Q9P2K3 495 aaPredicted RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 MOSPD1Q9UJG1 213 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 AAR2Q9Y312 384 aaKnown RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 IFT52Q9Y366 437 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 H0YAE9 185 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 CCRL2O00421 344 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 SOCS7O14512 581 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 TFECO14948 347 aaPredicted RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 RECQL4O94761 1208 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 PRSS23O95084 383 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 C22orf31O95567 290 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 EPHA2P29317 976 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 CCR1P32246 355 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 CD86P42081 329 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 TUFMP49411 452 aaKnown RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 WNT3AP56704 352 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 PAN2Q504Q3 1202 aaKnown RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 CATSPERGQ6ZRH7 1159 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 AHSA2Q719I0 299 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 MMAAQ8IVH4 418 aaKnown RBP14.21□□□□□ -0.13
SDC1-201ENST00000254351 OR2T11Q8NH01 316 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 CLHC1Q8NHS4 586 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 PSD2Q9BQI7 771 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 TTYH2Q9BSA4 534 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 RMND5AQ9H871 391 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 GLOD4Q9HC38 313 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 PLSCR3Q9NRY6 295 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 SNX8Q9Y5X2 465 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 COMMD10Q9Y6G5 202 aa14.21□□□□□ -0.13
SDC1-201ENST00000254351 ILVBLA1L0T0 632 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 DFNA5O60443 496 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 GSNP06396 782 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 JUNBP17275 347 aaPredicted RBP14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms