RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PEBP4Q96S96 227 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 NDNQ99608 321 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 RUVBL1Q9Y265 456 aaKnown RBP13.51□□□□□ -0.25
LDLR-201ENST00000252444 ATAD5Q96QE3 1844 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 BHMG1C9JSJ3 638 aaPredicted RBP13.51□□□□□ -0.25
LDLR-201ENST00000252444 GNAZP19086 355 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 EIF2DP41214 584 aaKnown RBP13.51□□□□□ -0.25
LDLR-201ENST00000252444 GPR180Q86V85 440 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 BANPQ8N9N5 519 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 TMIEQ8NEW7 156 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 ROPN1LQ96C74 230 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 PTCD3Q96EY7 689 aaKnown RBP13.51□□□□□ -0.25
LDLR-201ENST00000252444 ADAM33Q9BZ11 813 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 MIR1-1HGQ9H1L0 117 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 MAGEL2Q9UJ55 1249 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 SLC12A4Q9UP95 1085 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 TULP2O00295 520 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 RASSF9O75901 435 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 AGR2O95994 175 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 STC1P52823 247 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 LMAN2Q12907 356 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 RPA4Q13156 261 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 GTF2H2Q13888 395 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 RASIP1Q5U651 963 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 ANKRD22Q5VYY1 191 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 FSTL4Q6MZW2 842 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 GTF2H2CQ6P1K8 395 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 NCEH1Q6PIU2 408 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 C11orf96Q7Z7L8 435 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 CIR1Q86X95 450 aaPredicted RBP13.51□□□□□ -0.25
LDLR-201ENST00000252444 EID3Q8N140 333 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 C9orf16Q9BUW7 83 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 MYH11P35749 1972 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 SCN9AQ15858 1988 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 TRIM38O00635 465 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 RPS3P23396 243 aaKnown RBP eCLIP13.5□□□□□ -0.251e-7■■□□□ 12.5
LDLR-201ENST00000252444 AVPR1BP47901 424 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 ARRB1P49407 418 aaPredicted RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 MAPK10P53779 464 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 MRPS21P82921 87 aaKnown RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 HIPK4Q8NE63 616 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 SPATA22Q8NHS9 363 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 ZNF607Q96SK3 696 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 EPS8L2Q9H6S3 715 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 CERS4Q9HA82 394 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 METTL18O95568 372 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 GSTM2P28161 218 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 SLC1A2P43004 574 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 CCT8P50990 548 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 KPNB1Q14974 876 aaKnown RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 TAF8Q7Z7C8 310 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 OR2T3Q8NH03 318 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 MRPL38Q96DV4 380 aaKnown RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 MVB12BQ9H7P6 319 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 SPAG4Q9NPE6 437 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 TMEM45AQ9NWC5 275 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 CCDC162PA2VCL2 907 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 LCHNA4D1U4 455 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 CAPN8A6NHC0 703 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 K7EPI3 171 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 ERN1O75460 977 aaKnown RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 SERPINB7O75635 380 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 ABLIM3O94929 683 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 TBX18O95935 607 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 DAB2P98082 770 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 XIAPP98170 497 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 AAGABQ6PD74 315 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 CRTC3Q6UUV7 619 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 ADAMTS18Q8TE60 1221 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 SMPDL3AQ92484 453 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 LRTM1Q9HBL6 345 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 SNX7Q9UNH6 387 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 WBP11Q9Y2W2 641 aaKnown RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 WNT6Q9Y6F9 365 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 CLDN4O14493 209 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 APBB3O95704 486 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 IMPDH1P20839 514 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 NTSR1P30989 418 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 SRSF11Q05519 484 aaKnown RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 DLG1Q12959 904 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 SH3PXD2AQ5TCZ1 1133 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 RALGPS2Q86X27 583 aaPredicted RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 PPCDCQ96CD2 204 aa13.5□□□□□ -0.25
LDLR-201ENST00000252444 NDRG2Q9UN36 371 aaKnown RBP13.5□□□□□ -0.25
LDLR-201ENST00000252444 INPP4BO15327 924 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 PTX3P26022 381 aaPredicted RBP13.49□□□□□ -0.25
LDLR-201ENST00000252444 TARSP26639 723 aaKnown RBP13.49□□□□□ -0.25
LDLR-201ENST00000252444 RPL34P49207 117 aaKnown RBP13.49□□□□□ -0.25
LDLR-201ENST00000252444 ABATP80404 500 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 CLCQ05315 142 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 RFX4Q33E94 735 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 GALNT18Q6P9A2 607 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 ADHFE1Q8IWW8 467 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 PLPP6Q8IY26 295 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 ZDHHC14Q8IZN3 488 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 LCN9Q8WX39 176 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 MGME1Q9BQP7 344 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 NOD2Q9HC29 1040 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 PRKAG3Q9UGI9 489 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 H3BNH8 94 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms