RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 POM121CA8CG34 1229 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 SNX2O60749 519 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 PIRTP0C851 137 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 ZNF7P17097 686 aaPredicted RBP10.15□□□□□ -0.78
VPS50-201ENST00000251739 BPIP17213 487 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 CASRP41180 1078 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 CCR10P46092 362 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 CAPZBP47756 277 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 SMCPP49901 116 aaPredicted RBP10.15□□□□□ -0.78
VPS50-201ENST00000251739 NFKBIBQ15653 356 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 ZNF648Q5T619 568 aaPredicted RBP10.15□□□□□ -0.78
VPS50-201ENST00000251739 LRRC38Q5VT99 294 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 AGAP9Q5VTM2 703 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 ALS2CLQ60I27 953 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 WASH2PQ6VEQ5 465 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 PRSS42Q7Z5A4 293 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 PLXDC1Q8IUK5 500 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 UNC5BQ8IZJ1 945 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 STARD8Q92502 1023 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 KIAA1143Q96AT1 154 aaPredicted RBP10.15□□□□□ -0.78
VPS50-201ENST00000251739 C9orf72Q96LT7 481 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 VPS35Q96QK1 796 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 EFHD1Q9BUP0 239 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 SPATA16Q9BXB7 569 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 CEP41Q9BYV8 373 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 ALG2Q9H553 416 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 ZNF768Q9H5H4 540 aaKnown RBP10.15□□□□□ -0.78
VPS50-201ENST00000251739 WASH6PQ9NQA3 447 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 RAD18Q9NS91 495 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 KLC4Q9NSK0 619 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 IFNKQ9P0W0 207 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 SHOC2Q9UQ13 582 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 SPO11Q9Y5K1 396 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 SLC30A1Q9Y6M5 507 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 CENPEQ02224 2701 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 NOTCH2Q04721 2471 aa10.15□□□□□ -0.78
VPS50-201ENST00000251739 PIKFYVEQ9Y2I7 2098 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 ICE1Q9Y2F5 2266 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 SSU72P8A0A1W2PR75 194 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 POLR1CO15160 346 aaPredicted RBP10.14□□□□□ -0.79
VPS50-201ENST00000251739 KMOO15229 486 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 VEGFDO43915 354 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 SLC25A14O95258 325 aaPredicted RBP10.14□□□□□ -0.79
VPS50-201ENST00000251739 NDST3O95803 873 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 F8A1P23610 371 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 MAPK9P45984 424 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 CDK18Q07002 472 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 SRSF1Q07955 248 aaKnown RBP eCLIP10.14□□□□□ -0.79
VPS50-201ENST00000251739 DHX9Q08211 1270 aaKnown RBP10.14□□□□□ -0.79
VPS50-201ENST00000251739 PDK1Q15118 436 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 PRKD1Q15139 912 aaPredicted RBP10.14□□□□□ -0.79
VPS50-201ENST00000251739 TAZQ16635 292 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 CRTC3Q6UUV7 619 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 ABRAXAS1Q6UWZ7 409 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 NPNTQ6UXI9 565 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 NT5DC3Q86UY8 548 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 LRRTM4Q86VH4 590 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 TTC30BQ8N4P2 665 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 ESX1Q8N693 406 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 SPATA22Q8NHS9 363 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 C9orf43Q8TAL5 461 aaPredicted RBP10.14□□□□□ -0.79
VPS50-201ENST00000251739 DTX3LQ8TDB6 740 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 RSC1A1Q92681 617 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 SLC40A1Q9NP59 571 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 POT1Q9NUX5 634 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 SEMA5BQ9P283 1151 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 EPHA6Q9UF33 1036 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 KLHL3Q9UH77 587 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 HEY1Q9Y5J3 304 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 FER1L5A0AVI2 2057 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 SHANK1Q9Y566 2161 aa10.14□□□□□ -0.79
VPS50-201ENST00000251739 APOL1O14791 398 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 AURKAO14965 403 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 MTX2O75431 263 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 UBXN7O94888 489 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 MT-CYBP00156 380 aaPredicted RBP10.13□□□□□ -0.79
VPS50-201ENST00000251739 PRKAR1AP10644 381 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 FGF5P12034 268 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 ZNF28P17035 718 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 PTPN3P26045 913 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 CD68P34810 354 aaPredicted RBP10.13□□□□□ -0.79
VPS50-201ENST00000251739 HMGCLP35914 325 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 ARHGAP25P42331 645 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 NOP2P46087 812 aaKnown RBP10.13□□□□□ -0.79
VPS50-201ENST00000251739 LEPRP48357 1165 aaKnown RBP10.13□□□□□ -0.79
VPS50-201ENST00000251739 TPM4P67936 248 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 MC1RQ01726 317 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 AP1B1Q10567 949 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 GPR18Q14330 331 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 MESDQ14696 234 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 TCEAL1Q15170 157 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 INSCQ1MX18 579 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 SKIDA1Q1XH10 827 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 PLA2G4EQ3MJ16 856 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 TEX44Q53QW1 395 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 ATP1A1-AS1Q5TC04 95 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 KDELC1Q6UW63 502 aa10.13□□□□□ -0.79
VPS50-201ENST00000251739 PTRH1Q86Y79 214 aaKnown RBP10.13□□□□□ -0.79
VPS50-201ENST00000251739 RBM12BQ8IXT5 1001 aaKnown RBP10.13□□□□□ -0.79
VPS50-201ENST00000251739 SLC35G2Q8TBE7 412 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms